BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0013.p         (207 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1980 [S] COG3148 Uncharacterized conserved protein Vch Vibrio ...    91   3e-18
PA1424 Non COG                                                         82   7e-16

>VC1980 [S] COG3148 Uncharacterized conserved protein Vch Vibrio cholerae
          Length = 200

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 93/192 (48%), Gaps = 21/192 (10%)

Query: 3   ACICHWTSPIDHAFDVLILQHPLEVGNAKNSVRLLHLSLPASKLVVGSVF-DTDELEALL 61
           AC+C     ++ A +++ILQHP E      + R+L LSL   +L+VG  F + DEL  LL
Sbjct: 14  ACLCPSIVALESAVELIILQHPTEQKRPLGTARILSLSLANCRLLVGEDFREHDELNQLL 73

Query: 62  HGPSRLRNVSPSEKVHPVLLYTDDASTSATTYFDARTMRVEGQEQFQRVRLVILDGTWRK 121
             P           V   +LY ++ +   T      T R        + R+++LDGTW+K
Sbjct: 74  AEPD----------VDYYVLYPNEHAQECTK-ISLTTAR--------KTRVILLDGTWKK 114

Query: 122 SRKMLFENPILQTLPRLVLSDTPASRYTIRKSHKPEQLSTLEAVGYALMQLERNSEKYHP 181
           + KM   N  L  LP L L D     Y IRK+     LST+EA GY L+Q  +    + P
Sbjct: 115 AYKMWQINTQLHDLPSLHLPDECVGHYRIRKAPDDTALSTVEA-GYHLLQQWQPERDFSP 173

Query: 182 LLTAFDNFVLQQ 193
           LL  FD  +  Q
Sbjct: 174 LLKVFDAMIQYQ 185


>PA1424 Non COG
          Length = 203

 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 23/190 (12%)

Query: 4   CICHWTSPIDHAFDVLILQHPLEVGNAKNSVRLLHLSLPASKLVVGSVFDTDELEALLHG 63
           C+C     +     VL+LQHP EVG+A N+  L  L L  ++L VG  F  +        
Sbjct: 16  CLCALIPSLPSRTRVLVLQHPSEVGHALNTAGLAVLGLCNAELRVGERFAEETWRV---- 71

Query: 64  PSRLRNVSPSEKVHPVLLYTDDASTSATTYFDARTMRVEGQEQFQRVRLVILDGTWRKSR 123
                   P  +    LL+  + + +              +   + + LV+ DGTWRK+R
Sbjct: 72  --------PGYRA--CLLFPGEQARALAEMAA--------EAAGEPLLLVVPDGTWRKAR 113

Query: 124 KMLFENPILQTLPRLVLSDTPASRYTIRKSHKPEQLSTLEAVGYALMQLERNSEKYHPLL 183
           K+L  NP L  LPR+ L++  ASRY +RK+     LST+EA+  AL +LE     +  LL
Sbjct: 114 KLLHLNPALAALPRVSLAEGMASRYRLRKAPGEGALSTIEAIAAALDELE-APRTHEALL 172

Query: 184 TAFDNFVLQQ 193
             FD  +  Q
Sbjct: 173 KPFDALIEGQ 182