BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0010.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0728 [K] COG1327 Predicted transcriptional regulator, consist...   212   3e-55
VC2272 [K] COG1327 Predicted transcriptional regulator, consists...   179   2e-45
ybaD [K] COG1327 Predicted transcriptional regulator, consists o...   166   2e-41
ZybaD [K] COG1327 Predicted transcriptional regulator, consists ...   166   2e-41
ECs0466 [K] COG1327 Predicted transcriptional regulator, consist...   166   2e-41

>RSc0728 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Rso Ralstonia
           solanacearum
          Length = 149

 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 123/149 (82%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTLPVIVKKNGSRTE 60
           MKCPFC H  T V+DTR+SE+G ++RRRRRC +CD+RFTTYERIEL  P +VKKNGSR +
Sbjct: 1   MKCPFCGHAATQVIDTRMSEEGDTVRRRRRCESCDRRFTTYERIELFFPAVVKKNGSRVD 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQIGELVMRELKRLD 120
           +D  K++ S+ LALRKRPVSAEA+D AI  I++KLL  GE+E+ S +IGELVMRELKRLD
Sbjct: 61  YDRNKVKDSMRLALRKRPVSAEAIDEAIARIEEKLLSHGEKEIGSDRIGELVMRELKRLD 120

Query: 121 KIAYIRFASVYKSFEDVAEFQDAIAEVGQ 149
           KI YIRFASVY+SFEDV+EF+D + E  Q
Sbjct: 121 KIGYIRFASVYRSFEDVSEFRDMLDEFRQ 149


>VC2272 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Vch Vibrio cholerae
          Length = 156

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/147 (57%), Positives = 111/147 (75%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTLPVIVKKNGSRTE 60
           M CPFC+  DT V+D+RL  DGH +RRRR+C  C++RFTT+E  EL +P ++K NG+R  
Sbjct: 8   MHCPFCSENDTKVIDSRLVADGHQVRRRRQCLACNERFTTFETAELVMPRVIKSNGNREP 67

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQIGELVMRELKRLD 120
           FD  K+ G L  AL KRPVSA+A+++AI +I+ KL  +GEREV S  IG LVM +LK LD
Sbjct: 68  FDEEKMIGGLQRALEKRPVSADAIELAISTIKSKLRATGEREVPSKLIGNLVMEQLKVLD 127

Query: 121 KIAYIRFASVYKSFEDVAEFQDAIAEV 147
           K+AYIRFASVY+SFEDV EF + IA++
Sbjct: 128 KVAYIRFASVYRSFEDVREFGEEIAKL 154


>ybaD [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Eco Escherichia coli K12
          Length = 149

 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 106/145 (73%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTLPVIVKKNGSRTE 60
           M CPFC   DT V+D+RL  +G S+RRRR+C  C++RFTT+E  EL +P +VK N  R  
Sbjct: 1   MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQIGELVMRELKRLD 120
           F+  KLR  ++ AL KRPVS++ V+MAI  I+ +L  +GEREV S  IG LVM +LK+LD
Sbjct: 61  FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD 120

Query: 121 KIAYIRFASVYKSFEDVAEFQDAIA 145
           K+AYIRFASVY+SFED+ EF + IA
Sbjct: 121 KVAYIRFASVYRSFEDIKEFGEEIA 145


>ZybaD [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains EcZ Escherichia coli
           O157:H7 EDL933
          Length = 149

 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 106/145 (73%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTLPVIVKKNGSRTE 60
           M CPFC   DT V+D+RL  +G S+RRRR+C  C++RFTT+E  EL +P +VK N  R  
Sbjct: 1   MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQIGELVMRELKRLD 120
           F+  KLR  ++ AL KRPVS++ V+MAI  I+ +L  +GEREV S  IG LVM +LK+LD
Sbjct: 61  FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD 120

Query: 121 KIAYIRFASVYKSFEDVAEFQDAIA 145
           K+AYIRFASVY+SFED+ EF + IA
Sbjct: 121 KVAYIRFASVYRSFEDIKEFGEEIA 145


>ECs0466 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Ecs Escherichia coli
           O157:H7
          Length = 149

 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 106/145 (73%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTLPVIVKKNGSRTE 60
           M CPFC   DT V+D+RL  +G S+RRRR+C  C++RFTT+E  EL +P +VK N  R  
Sbjct: 1   MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQIGELVMRELKRLD 120
           F+  KLR  ++ AL KRPVS++ V+MAI  I+ +L  +GEREV S  IG LVM +LK+LD
Sbjct: 61  FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD 120

Query: 121 KIAYIRFASVYKSFEDVAEFQDAIA 145
           K+AYIRFASVY+SFED+ EF + IA
Sbjct: 121 KVAYIRFASVYRSFEDIKEFGEEIA 145