BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0007.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0731 [R] COG0824 Predicted thioesterase Rso Ralstonia solanac...   166   2e-41
VC1840 [R] COG0824 Predicted thioesterase Vch Vibrio cholerae         124   6e-29
PA0968 [R] COG0824 Predicted thioesterase Pae Pseudomonas aerugi...   123   2e-28
PM0971 [R] COG0824 Predicted thioesterase Pmu Pasteurella multocida   119   3e-27
ybgC [R] COG0824 Predicted thioesterase Eco Escherichia coli K12      116   1e-26

>RSc0731 [R] COG0824 Predicted thioesterase Rso Ralstonia solanacearum
          Length = 134

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/136 (61%), Positives = 102/136 (75%), Gaps = 6/136 (4%)

Query: 6   SPFDWKIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQQLAATTGAIFVVKNT 65
           S FDW +RVY+EDTD GGVVFYANYLKFFERARTEWLR+ G  QQ LA TTGAIFVV++T
Sbjct: 2   SSFDWNLRVYWEDTDAGGVVFYANYLKFFERARTEWLRALGVDQQALADTTGAIFVVRST 61

Query: 66  NVDYLSPARLDDELRLTVVVEKLRNASMEFVQEAWRLPSGDGEPRLLARGSITVVCVDQA 125
            VDY +PARLDD L++   +E++  AS++F QE+WR   GD    LL  G+I V CVD+ 
Sbjct: 62  AVDYRAPARLDDLLQVRSRMERVGPASVQFAQESWR---GD---ILLVSGTIRVGCVDRL 115

Query: 126 TFRPRPIPDELLTCLK 141
           TFRP PIP  +L  +K
Sbjct: 116 TFRPTPIPAPILATIK 131


>VC1840 [R] COG0824 Predicted thioesterase Vch Vibrio cholerae
          Length = 155

 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 6/126 (4%)

Query: 8   FDWKIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQQLAATTGAIFVVKNTNV 67
           F W + VYYEDTD GGVV++ANYLKFFERARTE LR+ G  QQ L    G  FVV++  +
Sbjct: 24  FHWPVTVYYEDTDAGGVVYHANYLKFFERARTEMLRAVGVHQQSLLE-QGIGFVVRHMEI 82

Query: 68  DYLSPARLDDELRLTVVVEKLRNASMEFVQEAWRLPSGDGEPRLLARGSITVVCVDQATF 127
           D+L  A+LDD L +   V +L+ AS+ F QE    P G     +L++  + V C+D  + 
Sbjct: 83  DFLKGAKLDDHLEVVTRVSELKKASLTFCQELVN-PEGT----VLSKAKVKVACIDNESM 137

Query: 128 RPRPIP 133
           RPR +P
Sbjct: 138 RPRALP 143


>PA0968 [R] COG0824 Predicted thioesterase Pae Pseudomonas aeruginosa
          Length = 148

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 80/133 (60%), Gaps = 5/133 (3%)

Query: 4   ASSPFDWKIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQQLAATTGAIFVVK 63
              PF  + RVYYEDTD GG+V+Y NYLKF ERARTE LR+ GF Q QL      +FVV 
Sbjct: 6   GGKPFQQRFRVYYEDTDAGGIVYYVNYLKFMERARTERLRALGFAQSQLVGDN-LLFVVH 64

Query: 64  NTNVDYLSPARLDDELRLTVVVEKLRNASMEFVQEAWRLPSGDGEPRLLARGSITVVCVD 123
           +    Y +PA+LDDEL ++  VE+L  AS++F Q+  R      +  LL  G   V CV 
Sbjct: 65  SAEARYHAPAKLDDELLVSAEVEELNRASLKFRQQVRRA----SDSVLLCEGRFLVACVR 120

Query: 124 QATFRPRPIPDEL 136
             T +PR IP+ L
Sbjct: 121 ADTLKPRAIPETL 133


>PM0971 [R] COG0824 Predicted thioesterase Pmu Pasteurella multocida
          Length = 136

 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 81/132 (61%), Gaps = 6/132 (4%)

Query: 5   SSPFDWKIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQQLAATTGAIFVVKN 64
           ++ F++ IRVYYEDTD GGVV++A YL FFERARTE+LR  GF Q  L       FVVK 
Sbjct: 3   ANVFNFPIRVYYEDTDAGGVVYHARYLHFFERARTEYLRCAGFSQHTLLNEQQLAFVVKT 62

Query: 65  TNVDYLSPARLDDELRLTVVVEKLRNASMEFVQEAWRLPSGDGEPRLLARGSITVVCVDQ 124
            N+DY  PA+LD+ L +  +V +L+ AS+ F Q   +      E ++L   ++ V CVD 
Sbjct: 63  MNIDYRYPAKLDNLLIVETLVTELKGASIFFTQRLKK------EEQILCEATVKVACVDL 116

Query: 125 ATFRPRPIPDEL 136
              +P  IP E+
Sbjct: 117 GKMKPIAIPAEM 128


>ybgC [R] COG0824 Predicted thioesterase Eco Escherichia coli K12
          Length = 134

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 5   SSPFDWKIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQQLAATTGAIFVVKN 64
           ++ F W +RVYYEDTD GGVV++A+Y+ F+ERARTE LR   F QQ L A   A FVV+ 
Sbjct: 3   TTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVA-FVVRK 61

Query: 65  TNVDYLSPARLDDELRLTVVVEKLRNASMEFVQEAWRLPSGDGEPRLLARGSITVVCVDQ 124
             V+Y +PARLDD L +   +  +R  S+ F Q        + E  LL    + VVCVD 
Sbjct: 62  MTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIV-----NAENTLLNEAEVLVVCVDP 116

Query: 125 ATFRPRPIPDELLTCLKK 142
              +PR +P  ++   K+
Sbjct: 117 LKMKPRALPKSIVAEFKQ 134