BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0006.p         (128 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0732 [U] COG0811 Biopolymer transport proteins Rso Ralstonia ...   201   4e-52
PA0969 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas...   153   1e-37
STM0745 [U] COG0811 Biopolymer transport proteins Sty Salmonella...   150   8e-37
tolQ [U] COG0811 Biopolymer transport proteins Eco Escherichia c...   149   1e-36
ZtolQ [U] COG0811 Biopolymer transport proteins EcZ Escherichia ...   149   1e-36

>RSc0732 [U] COG0811 Biopolymer transport proteins Rso Ralstonia
           solanacearum
          Length = 230

 Score =  201 bits (511), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 111/126 (88%), Gaps = 5/126 (3%)

Query: 8   GAVDPSLLLDARAA-----YQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGL 62
           G  DPS +LDA        YQREMD+LESHL FLASVGSVSPY+GLFGTVWGIMNAFRGL
Sbjct: 105 GVGDPSAILDAARRAMRAAYQREMDSLESHLPFLASVGSVSPYIGLFGTVWGIMNAFRGL 164

Query: 63  ANVQQATLAAVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNI 122
           +NVQQATL+AVAPGIAEAL+ATAIGLFAAIPAV+AYNRY+ ++DRLA RFESF+EEFSNI
Sbjct: 165 SNVQQATLSAVAPGIAEALVATAIGLFAAIPAVIAYNRYATEMDRLANRFESFMEEFSNI 224

Query: 123 LQRQAR 128
           LQRQ R
Sbjct: 225 LQRQTR 230


>PA0969 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas
           aeruginosa
          Length = 231

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 93/122 (76%), Gaps = 5/122 (4%)

Query: 10  VDPSLLLDA-----RAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLAN 64
           VDP  +++      R A  RE + LE+ L FLA+VGS SPYVGLFGTVWGIMN+FRGLA 
Sbjct: 104 VDPDAVMEGVARAMRVAISREEEKLEASLPFLATVGSTSPYVGLFGTVWGIMNSFRGLAT 163

Query: 65  VQQATLAAVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQ 124
           VQQATLA VAPGIAEALIATAIGLFAAIPAV+AYNR+S   + L  R+ +F +EF  IL 
Sbjct: 164 VQQATLATVAPGIAEALIATAIGLFAAIPAVIAYNRFSARSEMLIGRYYTFADEFQAILH 223

Query: 125 RQ 126
           R+
Sbjct: 224 RK 225


>STM0745 [U] COG0811 Biopolymer transport proteins Sty Salmonella
           typhimurium LT2
          Length = 230

 Score =  150 bits (378), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 90/109 (82%)

Query: 19  RAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIA 78
           R +  RE++ LE+H+ FL +VGS+SPY+GLFGTVWGIM+AF  L  V+QATL  VAPGIA
Sbjct: 113 RISMNRELETLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIA 172

Query: 79  EALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQA 127
           EALIATAIGLFAAIPAV+AYNR +  +++L + +++F+EEF+ IL RQA
Sbjct: 173 EALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQA 221


>tolQ [U] COG0811 Biopolymer transport proteins Eco Escherichia coli K12
          Length = 230

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 90/109 (82%)

Query: 19  RAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIA 78
           R +  RE++ LE+H+ FL +VGS+SPY+GLFGTVWGIM+AF  L  V+QATL  VAPGIA
Sbjct: 113 RISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIA 172

Query: 79  EALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQA 127
           EALIATAIGLFAAIPAV+AYNR +  +++L + +++F+EEF+ IL RQA
Sbjct: 173 EALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQA 221


>ZtolQ [U] COG0811 Biopolymer transport proteins EcZ Escherichia coli
           O157:H7 EDL933
          Length = 230

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 90/109 (82%)

Query: 19  RAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIA 78
           R +  RE++ LE+H+ FL +VGS+SPY+GLFGTVWGIM+AF  L  V+QATL  VAPGIA
Sbjct: 113 RISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIA 172

Query: 79  EALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQA 127
           EALIATAIGLFAAIPAV+AYNR +  +++L + +++F+EEF+ IL RQA
Sbjct: 173 EALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQA 221