BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0005.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0733 [U] COG0848 Biopolymer transport protein Rso Ralstonia s...    97   1e-20
NMB1728 [U] COG0848 Biopolymer transport protein Nme Neisseria m...    74   7e-14
NMA1983 [U] COG0848 Biopolymer transport protein NmA Neisseria m...    74   7e-14
Cj0180 [U] COG0848 Biopolymer transport protein Cje Campylobacte...    74   1e-13
PA0970 [U] COG0848 Biopolymer transport protein Pae Pseudomonas ...    71   8e-13

>RSc0733 [U] COG0848 Biopolymer transport protein Rso Ralstonia solanacearum
          Length = 144

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 11/133 (8%)

Query: 12  EINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAG----KSTQPPSDYIEIALKPNSQA 67
           +INVVPYIDVMLVLL+IFMVA P+ NP V+NLP+      + TQPP   I + +K +   
Sbjct: 16  DINVVPYIDVMLVLLVIFMVAAPVVNPGVVNLPSVANATPQQTQPP---IVVTIKGDGTI 72

Query: 68  TIRINGPKSG-GKKAETVTGKTDLSERLRKLHDDNPELAVMISADKDIKYDEVVQVISEA 126
             R+   KSG G   + +    +L   +++   +NP+  V+I+ADK ++YD V+ V+   
Sbjct: 73  LARV---KSGSGATEQKLANNQELRAFVKQRTGENPDQPVVIAADKTVQYDRVLTVMGVL 129

Query: 127 KKQGIARVGLATK 139
           K  G+ RVGL  K
Sbjct: 130 KGDGVKRVGLMVK 142


>NMB1728 [U] COG0848 Biopolymer transport protein Nme Neisseria meningitidis
           MC58
          Length = 144

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 13/134 (9%)

Query: 11  SEINVVPYIDVMLVLLIIFMVATPITNPSV-INLPTAGKST----QPPSDYIEIALKPNS 65
           S+INV P +DVMLVLLI+FM+  P+   S+ + LPTA + T    + P D + + +  N 
Sbjct: 15  SDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDKQPKDPLRLTIDANG 74

Query: 66  QATIRINGPKSGGKKAETVTGKTDLSERLRKLHDDNPELAVMISADKDIKYDEVVQVISE 125
                  G   GG  A  V    ++  RL+   + N  + V I+ADK ++YD V + +  
Sbjct: 75  -------GYYVGGDSASKVE-IGEVESRLKAAKEQNENVIVAIAADKAVEYDYVNKALEA 126

Query: 126 AKKQGIARVGLATK 139
           A++ GI ++G  T+
Sbjct: 127 ARQAGITKIGFVTE 140


>NMA1983 [U] COG0848 Biopolymer transport protein NmA Neisseria meningitidis
           Z2491
          Length = 144

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 13/134 (9%)

Query: 11  SEINVVPYIDVMLVLLIIFMVATPITNPSV-INLPTAGKST----QPPSDYIEIALKPNS 65
           S+INV P +DVMLVLLI+FM+  P+   S+ + LPTA + T    + P D + + +  N 
Sbjct: 15  SDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDKQPKDPLRLTIDANG 74

Query: 66  QATIRINGPKSGGKKAETVTGKTDLSERLRKLHDDNPELAVMISADKDIKYDEVVQVISE 125
                  G   GG  A  V    ++  RL+   + N  + V I+ADK ++YD V + +  
Sbjct: 75  -------GYYVGGDSASKVE-IGEVESRLKAAKEQNENVIVAIAADKAVEYDYVNKALEA 126

Query: 126 AKKQGIARVGLATK 139
           A++ GI ++G  T+
Sbjct: 127 ARQAGITKIGFVTE 140


>Cj0180 [U] COG0848 Biopolymer transport protein Cje Campylobacter jejuni
          Length = 136

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 15/132 (11%)

Query: 11  SEINVVPYIDVMLVLLIIFMVATPITNPSV-INLPTAGKSTQPPSDYIE--IALKPNSQA 67
           SEIN+ P+ID+MLVLLI+FM  TP+   S+ I LP   KS+Q   D ++  I L  N+  
Sbjct: 14  SEINITPFIDIMLVLLIVFMAVTPLITSSIKIELP---KSSQQAEDKLKNPIILYLNTDN 70

Query: 68  TIRINGPKSGGKKAETVTGKTDLSERLRKLHDDNPELAVMISADKDIKYDEVVQVISEAK 127
           T+ IN  K      E ++   D+  +       N E  +    DK +KY++++QV+ + K
Sbjct: 71  TLAINDDKLS---LENLSSALDIKTK------GNKEEIIYFHIDKSVKYEDIMQVMQKLK 121

Query: 128 KQGIARVGLATK 139
           + G  ++ L++K
Sbjct: 122 ENGYGKIALSSK 133


>PA0970 [U] COG0848 Biopolymer transport protein Pae Pseudomonas aeruginosa
          Length = 146

 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 7   RKFKSEINVVPYIDVMLVLLIIFMVATPITNPSV-INLPTAGKSTQPPSD---YIEIALK 62
           RK  +E+NVVPYIDVMLVLL+IFMV  P+ N  V ++LP       P  +    + +++K
Sbjct: 8   RKPVAEMNVVPYIDVMLVLLVIFMVTAPMLNQGVKVDLPKVSSEALPQDNNKQVLTLSVK 67

Query: 63  PNSQATIRINGPKSGGKKAETVTGKTDLSERLRKLHDDNPELAVMISADKDIKYDEVVQV 122
            +      +       K+ ++      +++ + K+    P+  V I  DK + Y  VV  
Sbjct: 68  ADGSYYWNVGSEVDTEKQTDSAVSLEQMTDAVTKIMSARPDTQVFIRGDKAVNYGAVVGA 127

Query: 123 ISEAKKQGIARVGLATK 139
           +   ++ G+  VGL T+
Sbjct: 128 MGALQQAGVPNVGLITE 144