BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0003.p (428 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0735 [U] COG0823 Periplasmic component of the Tol biopolymer ... 479 e-135 XF1897 [U] COG0823 Periplasmic component of the Tol biopolymer t... 326 8e-89 PA0972 [U] COG0823 Periplasmic component of the Tol biopolymer t... 319 6e-87 YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer ... 291 2e-78 STM0748 [U] COG0823 Periplasmic component of the Tol biopolymer ... 283 5e-76 >RSc0735 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Rso Ralstonia solanacearum Length = 432 Score = 479 bits (1232), Expect = e-135, Method: Compositional matrix adjust. Identities = 239/407 (58%), Positives = 301/407 (73%), Gaps = 5/407 (1%) Query: 26 SQAQIRFEITGVGASQIPIAITAFPGEESAPQQITSVVKADLARSGVFKLID-NGDALSD 84 ++AQ+ EI G G+SQ PIAI F GE PQ IT++V+ADL SG F +D G + D Sbjct: 27 ARAQLYVEIAGAGSSQYPIAIANFQGESQIPQDITAIVRADLVHSGRFSNVDVAGAVVPD 86 Query: 85 SSAVNYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSALSIGAQPQLLRLT 144 S A + W+ RGA A G+VTR D R+++R+RL+DT + L L++ LRL Sbjct: 87 SPAPDLGAWKSRGAAAFVGGTVTRNGD-RYEIRFRLYDTAKGESLGGLALTRGEGQLRLA 145 Query: 145 AHKIADDIYQKLTGIPGIFSTRISYVTKSGGEYRLEVADADGEGTQVALRSNEPIISPSW 204 AH+IAD IYQKL G G+F+TR+SYV+K G Y+L+++D+DG QVAL SNEPIISP+W Sbjct: 146 AHEIADYIYQKLIGDRGVFATRLSYVSKVGRRYQLQISDSDGANPQVALTSNEPIISPAW 205 Query: 205 SPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDGL 264 SPDGTKVAYVSFE +KPVVY+ +L++ +R++++N KG+NSAPAWSPDG R+AVAL+RDG Sbjct: 206 SPDGTKVAYVSFESRKPVVYVHDLISGRRAVISNQKGNNSAPAWSPDGRRVAVALSRDGN 265 Query: 265 TQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQVYKV---GLDGGSP 321 TQ+Y +NADGSGLRRLT S+ IDTEP FSPDG SIYFTSDR G PQ+Y++ G D GS Sbjct: 266 TQIYQVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQIYRMPTEGEDAGSA 325 Query: 322 QRVTFNGSYNISPRISPDGKTLAFISRRDGQFQLYALDLTNGQEIRLSDGSRDQSPSFAP 381 QRVTF G YN SPR+SPDGK LA+ISR G F+LY DL+NG L+D S D+SPSFA Sbjct: 326 QRVTFKGGYNTSPRVSPDGKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTSYDESPSFAA 385 Query: 382 NGKYIMYATEAGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFMK 428 NGK+I+YAT G R LA VS DGR +Q L+ QAG +REP WGPFM+ Sbjct: 386 NGKFILYATRVGGRSVLAAVSTDGRTRQILSLQAGTVREPAWGPFMQ 432 >XF1897 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Xfa Xylella fastidiosa 9a5c Length = 430 Score = 326 bits (835), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 179/425 (42%), Positives = 255/425 (60%), Gaps = 15/425 (3%) Query: 17 VAGLSF---APASQAQIRFEITGVGASQIPIAITAFPGEES--AP-QQITSVVKADLARS 70 + GL F A Q + +I G + PIA+ P +S AP ++SVV ADL RS Sbjct: 2 LVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSVGAPATDVSSVVAADLNRS 61 Query: 71 GVFKLIDNGDAL---SDSSAVNYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSS 127 G F+ + G + + S + + WQ + + VG V G + V Y LFD Sbjct: 62 GQFRTLPLGQIIERPTHGSEIRFPTWQALKQDYIVVGRVLDARQGTYRVEYELFDVRNGK 121 Query: 128 QLSALSIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGGE----YRLEVAD 183 ++ L++ A+ +R AH++AD IY+K+TG+ G F TRI+YVT SG Y L VAD Sbjct: 122 RMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRYALMVAD 181 Query: 184 ADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSN 243 +DG Q +RS EP++SP WSPDG K+AYVSFE +YIQ++ T R +V++F+G N Sbjct: 182 SDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVSFEKGGSSIYIQDIATGSRELVSSFRGIN 241 Query: 244 SAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTS 303 +AP+++PDG R+A++L+R G ++YV++ L +LTNS GIDTEP +S DG IYFTS Sbjct: 242 AAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPAWSSDGKFIYFTS 301 Query: 304 DRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGQFQLYALDLTNG 363 DR G PQ+YKV GG+ RVTF G+YN + +S D K + +++ +D ++G Sbjct: 302 DRGGRPQIYKVASVGGTATRVTFQGNYNATTSVSYDDKKIVVAQGSGNVYRIAMMDQSSG 361 Query: 364 QEI--RLSDGSRDQSPSFAPNGKYIMYATEAGRRGSLAVVSVDGRIKQRLTTQAGDIREP 421 + LS GS D+SPSFAPN ++YA G RG L VS D R++QRL + D+REP Sbjct: 362 STVWNTLSTGSLDESPSFAPNASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREP 421 Query: 422 TWGPF 426 WGP+ Sbjct: 422 AWGPY 426 >PA0972 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Pae Pseudomonas aeruginosa Length = 432 Score = 319 bits (818), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 171/399 (42%), Positives = 247/399 (61%), Gaps = 13/399 (3%) Query: 42 IPIAIT--AFPGEESAPQQITSVVKADLARSGVFKLIDNGDALSD---SSAVNYADWQKR 96 IPIA+ F G P+ +++++ DL SG F+ + + +S +S V + DW+ Sbjct: 35 IPIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQASEVIFRDWKAV 94 Query: 97 GANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSALSIGAQPQLLRLTAHKIADDIYQKL 156 G N + VG++ A GR V+Y LFD Q+ S+ LR +H IAD ++KL Sbjct: 95 GVNYVMVGNIVP-AGGRLQVQYALFDVGTEQQVLTGSVTGSTDQLRDMSHYIADQSFEKL 153 Query: 157 TGIPGIFSTRISYVTKS-----GGEYRLEVADADGEGTQVALRSNEPIISPSWSPDGTKV 211 TGI G FST++ YVT Y L+ +D DG L+S EPI+SP +SPDG ++ Sbjct: 154 TGIKGAFSTKMLYVTAERFSVDNTRYTLQRSDYDGARPVTLLQSREPIVSPRFSPDGRRI 213 Query: 212 AYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVIN 271 AYVSFE K+P ++IQ + T +R + NF+G N APA+SPDG+RLA L+RDG ++YV++ Sbjct: 214 AYVSFEQKRPRIFIQYVDTGRREQITNFEGLNGAPAFSPDGNRLAFVLSRDGNPEIYVMD 273 Query: 272 ADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYN 331 LRRLTN+ IDTEP + DG ++YFTSDR G PQ+YK+ ++ G+ RVTF G+YN Sbjct: 274 LGSRALRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNVNSGAVDRVTFIGNYN 333 Query: 332 ISPRISPDGKTLAFISRRDG--QFQLYALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYA 389 +P++S D KTL + R+ G FQ+ A DL G LS+ + D SP+ APNG ++YA Sbjct: 334 ANPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTLDDSPTVAPNGTMLIYA 393 Query: 390 TEAGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFMK 428 T RG L +VS++GR++ L T GD+REP+W P++ Sbjct: 394 TRQQDRGVLMLVSINGRVRIPLPTAQGDVREPSWSPYLN 432 >YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Ype Yersinia pestis Length = 430 Score = 291 bits (746), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 167/416 (40%), Positives = 240/416 (57%), Gaps = 10/416 (2%) Query: 22 FAPASQAQIRFEITGVGASQIPIAITAFP--GEESAPQQITSVVKADLARSGVFKLIDNG 79 +A A++R EIT S PI + F G + P++I ++V ADL SG F ID Sbjct: 15 WASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAA 74 Query: 80 ---DALSDSSAVNYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQS--SQLSALSI 134 S ++ V A W G +A+ VG V ADG + V Y+L DT S S L+ Sbjct: 75 RMPQQPSTAAEVTPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGSAGSILAQNQY 134 Query: 135 GAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGG---EYRLEVADADGEGTQV 191 Q LR +AH ++D++++KLTGI G F TRI+YV K+ G + L V+D DG V Sbjct: 135 KVTKQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVKTNGGKFPHELRVSDYDGYNQFV 194 Query: 192 ALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPD 251 RS EP++SP+WSPDG+K+AYV+FE K + IQ L VA+F N APA+SPD Sbjct: 195 VHRSPEPLMSPAWSPDGSKIAYVTFESGKSALVIQTLANGAIRQVASFPRHNGAPAFSPD 254 Query: 252 GSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQV 311 G++LA AL++ G +YV++ + ++T+ +TEP + PD ++ +TSD+ G PQV Sbjct: 255 GTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQV 314 Query: 312 YKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGQFQLYALDLTNGQEIRLSDG 371 YKV ++GG PQR+T+ GS N + +SPDGK L +S G + DL G L+D Sbjct: 315 YKVNINGGVPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLETGAVQVLTDT 374 Query: 372 SRDQSPSFAPNGKYIMYATEAGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFM 427 D++PS APNG ++Y++ G L +VS DGR K RL G ++ P W P++ Sbjct: 375 LLDETPSIAPNGTMVIYSSTQGLGSVLQLVSTDGRFKARLPATDGQVKFPAWSPYL 430 >STM0748 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Sty Salmonella typhimurium LT2 Length = 430 Score = 283 bits (725), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 160/418 (38%), Positives = 237/418 (56%), Gaps = 10/418 (2%) Query: 20 LSFAPASQAQIRFEITGVGASQIPIAITAFP--GEESAPQQITSVVKADLARSGVFKLID 77 + +A A++R EIT S PI + F G +AP+ I +V ADL SG F +D Sbjct: 13 MLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLD 72 Query: 78 NG---DALSDSSAVNYADWQKRGANALAVGSVTRLADGRFDVRYRLFDT--VQSSQLSAL 132 + + V W G +A+ VG VT DG ++V Y+L DT + L+ Sbjct: 73 RSRLPQQPATAQEVQPTAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN 132 Query: 133 SIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGG---EYRLEVADADGEGT 189 S Q LR H +D++++KLTGI G F TRI+YV ++ G Y L V+D DG Sbjct: 133 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ 192 Query: 190 QVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWS 249 V RS +P++SP+WSPDG+K+AYV+FE + + IQ L VA+F N APA+S Sbjct: 193 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS 252 Query: 250 PDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGP 309 PDG++LA AL++ G +YV++ +R++T+ +TEP + PD ++ FTSD++G P Sbjct: 253 PDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRP 312 Query: 310 QVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGQFQLYALDLTNGQEIRLS 369 QVYK+ ++GG+ QR+T+ GS N +S DGK + +S +GQ + DL G LS Sbjct: 313 QVYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLS 372 Query: 370 DGSRDQSPSFAPNGKYIMYATEAGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFM 427 D++PS APNG ++Y++ G L +VS DGR K RL G ++ P W P++ Sbjct: 373 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSPYL 430