BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0002.p         (173 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0736 [M] COG2885 Outer membrane protein and related peptidogl...   184   9e-47
PM0966 [M] COG2885 Outer membrane protein and related peptidogly...   121   9e-28
PA0973 [M] COG2885 Outer membrane protein and related peptidogly...   120   2e-27
HI0381 [M] COG2885 Outer membrane protein and related peptidogly...   119   3e-27
VC1835 [M] COG2885 Outer membrane protein and related peptidogly...   119   3e-27

>RSc0736 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Rso Ralstonia
           solanacearum
          Length = 172

 Score =  184 bits (467), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 118/154 (76%), Gaps = 4/154 (2%)

Query: 20  CSS-TKLDDKANAPVQTGASNSGADTRAVNSVDTGSVDPLNDPQGVLAKRSVYFDYDSYT 78
           CSS  KLDD +     TG + +GADTR V  VD  S D L DP   LAKRSVYFD+DSYT
Sbjct: 22  CSSGVKLDDTSKN--ATGGAAAGADTRNVTPVDV-SRDELTDPNSPLAKRSVYFDFDSYT 78

Query: 79  VKPEYRTVIENHAKYLVAHKDRKVIIQGNTDDRGGAEYNLALGQKRAEAVRKALVLLGVS 138
           VKPEY+ ++  HA+YL +H  RKV+IQGNTD+RG +EYNLALGQKRAEAVR+AL  LGV 
Sbjct: 79  VKPEYQGLLTQHARYLQSHNQRKVLIQGNTDERGTSEYNLALGQKRAEAVRRALSSLGVP 138

Query: 139 DAQVEAVSFGKEKPKALGQDEASYAENRRADIAY 172
           D+Q+E+VS GKEKP+A G DE S+A+NRR+DI Y
Sbjct: 139 DSQMESVSLGKEKPQASGHDEESWAQNRRSDIVY 172


>PM0966 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pmu Pasteurella
           multocida
          Length = 150

 Score =  121 bits (303), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 98/172 (56%), Gaps = 22/172 (12%)

Query: 1   MRTISTFALIVSSAVLLAACSSTKLDDKANAPVQTGASNSGADTRAVNSVDTGSVDPLND 60
           M+ ++   L+  S  +LAAC S+K D+ A      G    G            SV  L  
Sbjct: 1   MKKLTKVLLVAGSVAVLAACGSSKKDESA------GQMFGGY-----------SVQDLQQ 43

Query: 61  PQGVLAKRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVIIQGNTDDRGGAEYNLAL 120
                   +VYF +D Y ++ EY  +++ HA +L A    KV+++GNTD+RG  EYN+AL
Sbjct: 44  RY-----NTVYFGFDKYNIEGEYVQILDAHAAFLNATPATKVVVEGNTDERGTPEYNIAL 98

Query: 121 GQKRAEAVRKALVLLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADIAY 172
           GQ+RA+AV+  L   GV   QV  VS+G+EKP  LG DEA+Y++NRRA +AY
Sbjct: 99  GQRRADAVKHYLSAKGVQAGQVSTVSYGEEKPAVLGHDEAAYSKNRRAVLAY 150


>PA0973 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 168

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 8/171 (4%)

Query: 1   MRTISTFALIVSSAVLLAACSSTKLDDKANAPVQTGASNSGADTRAVNSVDTGSVD-PLN 59
           M     FA +  +  +   CSS   D           +N G D  A    ++G+VD  L+
Sbjct: 3   MLKFGKFAALALAMAVAVGCSSKGGDASGEG------ANGGVDPNAGYGANSGAVDGSLS 56

Query: 60  DPQGVLAKRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVIIQGNTDDRGGAEYNLA 119
           D   + A  + YF+YDS  +KPE    ++ HAK L     R V+++G+TD+RG  EYN+A
Sbjct: 57  DEAALRAITTFYFEYDSSDLKPEAMRALDVHAKDLKGSGQR-VVLEGHTDERGTREYNMA 115

Query: 120 LGQKRAEAVRKALVLLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADI 170
           LG++RA+AV++ LVL GVS AQ+E VS+GKE+P A G DE S+A+NRR ++
Sbjct: 116 LGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 166


>HI0381 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Hin Haemophilus
           influenzae
          Length = 153

 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 94/166 (56%), Gaps = 23/166 (13%)

Query: 9   LIVSSAVLLAACSSTKLDDKANAPVQTGASNSGADTRAVNSVDTGSVDPLNDPQGVLAKR 68
           L+  S   LAACSS+  D   N   QT    S AD                     L +R
Sbjct: 9   LVAGSVAALAACSSSNNDAAGNGAAQTFGGYSVAD---------------------LQQR 47

Query: 69  --SVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVIIQGNTDDRGGAEYNLALGQKRAE 126
             +VYF +D Y +  EY  +++ HA YL A    KV+++GNTD+RG  EYN+ALGQ+RA+
Sbjct: 48  YNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRAD 107

Query: 127 AVRKALVLLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADIAY 172
           AV+  L   GV   ++  VS+G+EKP  LG DEA+Y++NRRA +AY
Sbjct: 108 AVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY 153


>VC1835 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Vch Vibrio
           cholerae
          Length = 172

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 5/167 (2%)

Query: 8   ALIVSSAVL-LAACSSTKLDDKANAPVQTGASN-SGADTRAVNSVDTGSVDPLNDPQGVL 65
           +L+++  VL + ACSS+  DD AN+  QT  S  S  D+  +N+    +   L + Q + 
Sbjct: 9   SLLIALPVLAVTACSSS--DDAANSGSQTNQSAVSTVDSNGLNAQGQLTEQELKE-QALR 65

Query: 66  AKRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVIIQGNTDDRGGAEYNLALGQKRA 125
             +++YF +D+ T+  +Y  ++  HA YLV +   +V I+G+ D+RG  EYN+ALG++RA
Sbjct: 66  ENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLRVTIEGHADERGTPEYNIALGERRA 125

Query: 126 EAVRKALVLLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADIAY 172
           +AV K L  LGV   Q+  VS+G+EKP  LGQ E +YA+NRRA + Y
Sbjct: 126 QAVAKYLEALGVQAGQLSIVSYGEEKPLVLGQSEEAYAKNRRAVLVY 172