BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0001.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc02281 [MU] COG1538 Outer membrane protein Sme Sinorhizobium m...    75   3e-14
AGl1720 [MU] COG1538 Outer membrane protein Atu Agrobacterium tu...    69   2e-12
SMa1037 [MU] COG1538 Outer membrane protein Sme Sinorhizobium me...    67   8e-12

>SMc02281 [MU] COG1538 Outer membrane protein Sme Sinorhizobium meliloti
          Length = 481

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 2   QAWRERQDAYTLARRYQEEWLPLRQRIADENVLRYNGMLVSVFTLLADAREQAATVNAAI 61
           QA+R     Y +AR Y+   +PLR +I ++++L YNGM+ S F LLAD+RE+  ++  AI
Sbjct: 389 QAYRAN---YDIARHYRNSVVPLRTKIEEQSLLTYNGMITSTFELLADSREKVNSILLAI 445

Query: 62  EAQRDFWIADASLQLALGGRPTQGK 86
            A+RDFW+A+A L  A+ G    G+
Sbjct: 446 NAKRDFWLAEADLAPAIYGGGASGE 470


>AGl1720 [MU] COG1538 Outer membrane protein Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 492

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 51/77 (66%)

Query: 2   QAWRERQDAYTLARRYQEEWLPLRQRIADENVLRYNGMLVSVFTLLADAREQAATVNAAI 61
            A++  +  Y +A  Y+   +PLR RI +E++  YNGML + F LLAD+RE+  +   AI
Sbjct: 391 SAYQAYRSTYDIALHYRNSVVPLRNRIEEESMRTYNGMLTNTFELLADSREKVNSNLLAI 450

Query: 62  EAQRDFWIADASLQLAL 78
           +A+RDFW+A+A L  A+
Sbjct: 451 DAKRDFWLAEAGLAPAI 467


>SMa1037 [MU] COG1538 Outer membrane protein Sme Sinorhizobium meliloti
          Length = 488

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 2   QAWRERQDAYTLARRYQEEWLPLRQRIADENVLRYNGMLVSVFTLLADAREQAATVNAAI 61
           QA+R     Y +AR Y+   +PLR +I +E++L YN M+ + F LLAD+RE+      A+
Sbjct: 390 QAYRAN---YDIARHYRNSVVPLRTKIEEESLLTYNAMITNTFELLADSREKVNANLLAV 446

Query: 62  EAQRDFWIADASLQLAL 78
            A+RDFW+A+A+L  A+
Sbjct: 447 NAKRDFWLAEANLAPAI 463