BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0005.p         (1096 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SA0089 [L] COG1112 Superfamily I DNA and RNA helicases and helic...   223   2e-57
RC1126 [L] COG1112 Superfamily I DNA and RNA helicases and helic...    82   6e-15
STM4489 [L] COG1112 Superfamily I DNA and RNA helicases and heli...    73   3e-12

>SA0089 [L] COG1112 Superfamily I DNA and RNA helicases and helicase subunits
            Sau Staphylococcus aureus N315
          Length = 1050

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 201/383 (52%), Gaps = 44/383 (11%)

Query: 715  WKIDGWREARARVFIKALKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSVW 774
            W  D  +  RA +F++A+ LH+       + +      IN      +    +   + + W
Sbjct: 677  WTSDELQYRRAMLFLRAMILHKLLLIANNTTIYYA---INDFKDRRKLIDANPDKVHNAW 733

Query: 775  ASLFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVGD 834
              + ++ PV+S+TFASF   +G + K  I +L +DEAGQA PQAAVGAL+R+K+ V VGD
Sbjct: 734  NVMHLIFPVVSTTFASFKSMYGGIPKDFIDYLFIDEAGQAIPQAAVGALYRSKKVVAVGD 793

Query: 835  TFQLKPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADAATRWG--RLVGPTAHERRW 892
              Q++P++ + +  ++++RK Y V  Y + K  S Q +AD A ++G  +     ++++ W
Sbjct: 794  PIQIEPVVTLESHLIDNIRKNYHVPEYLVSKEASVQSVADNANQYGFWKSDATDSNQKTW 853

Query: 893  AGLPLVVHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPASIV----TGWIDVKGPS 948
             G+PL VHRRC +PM+ IAN+IAY   MV            P++I     TGW DVKG +
Sbjct: 854  IGIPLWVHRRCLKPMFTIANQIAYNNKMV-----------LPSNITKVGKTGWYDVKGNA 902

Query: 949  -NGNWVPEEGNALHRLL-----QVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVS-- 1000
                +V E G  +  LL     + + E G       VI+PF AV+ ++ R +  ++ +  
Sbjct: 903  VQKQFVKEHGEKVVGLLADDWIEAIKE-GKNEPSSFVISPFSAVQQQIKRMLKQQLPTRI 961

Query: 1001 ---------------GTIHTMQGKESDVVILVLGGSSHGGDARGWAVAEPNLINVAVTRA 1045
                           GT+HT QGKE+  V  V+G  +    A  W+  +PNL+NVAVTRA
Sbjct: 962  DIERTKINQWVDKSIGTVHTFQGKEAQKVYFVIGTDNTQDGAVNWSCEKPNLLNVAVTRA 1021

Query: 1046 KRRLYVIGDRDSWCRHPLFAEVM 1068
            K+  YVIGD       P +  + 
Sbjct: 1022 KKEFYVIGDMQRIQMKPFYETIF 1044



 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 38/287 (13%)

Query: 159 ITAATIVDVTRMIRKELGVEEFFGDIDSFKLRFRSKPVNANKIEQEDDP---LNSMILRD 215
           I A   ++  ++ + +   +E+F  ++S K       V    ++  D P    NS  + D
Sbjct: 164 ILADEPINEFKLKKMDKAYDEYFSVLNSKKDGLFGHYVAIEYVKDSDLPQPEFNSFFISD 223

Query: 216 LTNVASQIHRGEVSEPLSQYLFRHDESKRLDLDGKEAVWPLINQLLPDRYPPGCWPSEGH 275
           +        R   ++ L  Y+   +ES+R+++D  + ++     L P R P G WPS+  
Sbjct: 224 IEKA-----RKSPNQTLIDYIEGVEESQRIEVDENKEMFDKF--LHPSRLPDGRWPSQTE 276

Query: 276 IGLVHSQQVAVNTILKELGDSAGIVGVNGPPGTGKTTLLRDLIAAVIVRRADAMARFDRP 335
             L   QQ+AVN I      +  I  VNGPPGTGKTTLL+D+ A ++V R   +A+ + P
Sbjct: 277 FRLSLMQQLAVNQIT---SGNERISSVNGPPGTGKTTLLKDIFAHLVVERGKELAKLNNP 333

Query: 336 SHMFQENAKEDVTDEDKTISCFKLKPQLFGFEIVIASSNNGAVENVSLELPQRDKVDEL- 394
              F +    +  D+      + LK  +  +++V+ASSNNGAVEN+S +LP   K++E+ 
Sbjct: 334 KDAFVKTKIHETDDK----YVYLLKESIAKYKMVVASSNNGAVENISKDLP---KIEEII 386

Query: 395 -----------------WLEELDHFADLGEILASKPAWGLISGALGR 424
                               EL  FA++ E L  + AWGL SG  G+
Sbjct: 387 RNPEKCKFPKYEQNYANLAHELKDFAEIAEDLIGESAWGLFSGVFGK 433


>RC1126 [L] COG1112 Superfamily I DNA and RNA helicases and helicase
           subunits Rco Rickettsia conorii
          Length = 133

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 774 WASLFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVG 833
           W + FM++PV+S+TF SF +   +     I WL +DEAGQ PPQ A  A++++ + V+VG
Sbjct: 15  WQNFFMVIPVVSTTFHSFDKMLATSEHNAIPWLFIDEAGQIPPQYAASAIYKSTKVVVVG 74

Query: 834 DTFQLKPIINVSNAAL---EHMRKRYGVDPYWIPKTLSAQILAD 874
           D  Q  PI  +    +   EH +  Y   P W P  +S Q LAD
Sbjct: 75  DPLQTDPISILKQDLIKLCEHFKVSY---PEWSPSEVSLQNLAD 115


>STM4489 [L] COG1112 Superfamily I DNA and RNA helicases and helicase subunits
            Sty Salmonella typhimurium LT2
          Length = 1171

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 128/297 (43%), Gaps = 54/297 (18%)

Query: 806  LLVDEAGQAPPQAAVGALWRAKRAVLVGDTFQLKPI------INVSNAALEHMRKRYGVD 859
            L+VDEAGQ  P+ A  +   AK+A+++GDT Q+ PI      I++ N   E +      +
Sbjct: 694  LIVDEAGQVLPEVAAASFALAKKALVIGDTEQIPPIWSITPAIDIGNMLAEKILSGSTQE 753

Query: 860  PYWIPKTLSAQILADAATRWGRLVGPTAHERRW-----AGLPLVVHRRCDRPMYDIANRI 914
                  T  A++   AA+     +   A   ++      G+ L  HRRC   +    N +
Sbjct: 754  EITEKYTAIAELGKSAASGSVMKIAQCASRYQYDPELARGMYLYEHRRCFDNIIGYCNTL 813

Query: 915  AYGGAMVYGTKDPSPER---ETPASIVTGWIDVKG----PSNGN------------WVPE 955
             Y G ++       P+R   E+      G++ + G     S+G+            W+ +
Sbjct: 814  CYHGKLL-------PKRGCEESNLMPAMGYLHIDGKGELASSGSRYNLLEAETIAAWLTD 866

Query: 956  EGNALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVS----------GTIHT 1005
               ++       H     ++ + ++TPF A    + + +  + +S          GT+H+
Sbjct: 867  NQQSIE-----AHYGKSLHEVVGIVTPFSAQVPTIKQALDKQGISAGTNETSLTVGTVHS 921

Query: 1006 MQGKESDVVILVLGGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDRDSWCRHP 1062
            +QG E  +VI     S H   A  +  ++ +++NVAV+RAK    V GD D +   P
Sbjct: 922  LQGAERAIVIFSPVYSKHEDGA--FIDSDNSMLNVAVSRAKDSFLVFGDMDLFEIQP 976