BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0096.p         (190 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2134 [S] COG3652 Predicted outer membrane protein Pae Pseudomo...   100   3e-21
CC3563 Non COG                                                         69   6e-12

>PA2134 [S] COG3652 Predicted outer membrane protein Pae Pseudomonas
           aeruginosa
          Length = 190

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 87/133 (65%), Gaps = 2/133 (1%)

Query: 49  FMTNAAEAGHTEVEASKIALEKSSNPAVKQFAQKMIDEHTTVGEELKQLASSKNVSLPEE 108
           F++ A+ AG  E+EA K+ALEKS+   VK FA++MID+H  V  EL+ LA  K + + ++
Sbjct: 53  FVSEASAAGVAEIEAGKMALEKSTAADVKVFAKQMIDDHGKVNAELRSLAERKKLEVEDD 112

Query: 109 PSMAQRAKIAVLEKLKGNTFDQRYASMIGVSAHEDAVKLFQKASSSAQDAEVKSFAAKTL 168
            S+  +AK  +L+ L+  +FD  YA+   V+AHE AV+LF +A+ +  D E+++FA   L
Sbjct: 113 ASLTDKAKATLLD-LRDASFDPAYANN-QVAAHEKAVELFTQAADNLTDPELQAFAKTHL 170

Query: 169 PGLEKHLAMGREL 181
           P L+ HL M R L
Sbjct: 171 PALKHHLEMARAL 183


>CC3563 Non COG
          Length = 231

 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 3/144 (2%)

Query: 49  FMTNAAEAGHTEVEASKIALEKSSNPAVKQFAQKMIDEHTTVGEELKQ--LASSKNVSLP 106
           F    A+    E+EA+K+A  +S+NP+VK+FA  M          L    + S   ++LP
Sbjct: 83  FAAKLADGAMFEIEAAKLATSRSTNPSVKKFAIAMDAAQKKTSRSLNTAIITSGVTINLP 142

Query: 107 EEPSMAQRAKIAVLEKLKGNTFDQRYASMIGVSAHEDAVKLFQKASSSAQDAEVKSFAAK 166
              S   +  +  L K     FD++YA ++ +  H+  + L Q+ +       +K+FAA+
Sbjct: 143 TMLSQDLQDALDDLAKTDPKDFDKQYADVM-IDTHQSTLNLLQRYAQDGDTPALKTFAAE 201

Query: 167 TLPGLEKHLAMGRELKQSLDAGKK 190
           T P +++HL M   LK+   AG+K
Sbjct: 202 TAPTIQEHLNMAEGLKKGFGAGEK 225