BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0094.p         (242 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0355 [R] COG0693 Putative intracellular protease/amidase Pae P...   216   4e-56
DR1199 [R] COG0693 Putative intracellular protease/amidase Dra D...   158   9e-39
lin2358 [R] COG0693 Putative intracellular protease/amidase Lin ...   133   3e-31
PA4171 [R] COG0693 Putative intracellular protease/amidase Pae P...   130   2e-30
PH1704 [R] COG0693 Putative intracellular protease/amidase Pho P...   130   3e-30

>PA0355 [R] COG0693 Putative intracellular protease/amidase Pae Pseudomonas
           aeruginosa
          Length = 179

 Score =  216 bits (550), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 125/177 (70%)

Query: 1   MSNRYHQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 60
           M+   H   VA LVTDGFEQ EL  PKKALE AGATV ILSDK+  V+G+ H    E   
Sbjct: 1   MTQSLHGKVVAALVTDGFEQVELTGPKKALEDAGATVRILSDKAGEVRGWNHHQPAEAFR 60

Query: 61  VDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLLIS 120
           VDG+ ++AS DDY A+LLPGGV+N D +R L +A+     A  A KP+A ICHG WLLIS
Sbjct: 61  VDGTFEDASLDDYDALLLPGGVINSDQIRSLAKAQELAIRAEQASKPVAVICHGAWLLIS 120

Query: 121 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPADIPAFNNEFMKLL 177
           AG+ +GRT+TSWPSL+DD  NAG  WVDQEV  D   VSSRKP DIPAFN  F+++L
Sbjct: 121 AGLVQGRTLTSWPSLKDDINNAGGHWVDQEVAVDGKLVSSRKPEDIPAFNRRFIEIL 177


>DR1199 [R] COG0693 Putative intracellular protease/amidase Dra Deinococcus
           radiodurans
          Length = 190

 Score =  158 bits (400), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 108/180 (60%), Gaps = 1/180 (0%)

Query: 9   KVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFK-HVDKGEVVSVDGSLDN 67
           K+A+L  DG E+ EL  P+ A+EAAG T  ++S +   +Q  K  ++  E   VD  +  
Sbjct: 11  KIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSE 70

Query: 68  ASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLLISAGIAKGR 127
               DY  +LLPGG VN D +RL   A  FVR   DA KPIA+ICHG W L   GIA+G 
Sbjct: 71  VQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGL 130

Query: 128 TVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPADIPAFNNEFMKLLDEQQRREHRQ 187
            +TSWPSL+ +   AG+QWVD+E V D+  V+SRKP D+PAFN + ++   E      R+
Sbjct: 131 KMTSWPSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSRRK 190


>lin2358 [R] COG0693 Putative intracellular protease/amidase Lin Listeria
           innocua
          Length = 173

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 4/171 (2%)

Query: 9   KVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVSVDGSLDNA 68
           KV  LV++ FE  EL  P   L  AGA+VH++++++  V    H   G  V+ D   D+ 
Sbjct: 7   KVIALVSEDFEDLELWYPVLRLREAGASVHLVAEEAKKVY---HGKYGVPVTSDYDFDSV 63

Query: 69  SADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLLISAGIAKGRT 128
            A+DY  +L+PGG  + D +R      N VRA + A+KPI  ICH GW+L+SAGI +G  
Sbjct: 64  RAEDYDGILVPGGW-SPDKLRRFDSVLNLVRAFDKAKKPIGQICHAGWVLVSAGILEGVN 122

Query: 129 VTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPADIPAFNNEFMKLLDE 179
           VTS P ++DD  NAG+ W ++ VV D + +SSR+P D+P +   F+  L++
Sbjct: 123 VTSTPGIKDDMTNAGAIWHNEPVVTDGHIISSRRPPDLPEYLPAFISALED 173


>PA4171 [R] COG0693 Putative intracellular protease/amidase Pae Pseudomonas
           aeruginosa
          Length = 187

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 103/176 (58%), Gaps = 6/176 (3%)

Query: 1   MSNRYHQLKVAVLVTD-GFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKH-VDKGEV 58
           MS +     V V+  + G E+ ELLEP K L+  GATV   + +    Q + H  +K  +
Sbjct: 1   MSAKLQGKNVLVITANTGIERDELLEPLKTLKQQGATVTHATIEGGEAQTWVHDSEKDLI 60

Query: 59  VSVDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLL 118
           V+ D  L    A+DY  +L+PGG VN D +R   +AR  VR  ++A K +A+ICHG WLL
Sbjct: 61  VNSDARLQGLRAEDYDLLLVPGGTVNADTLRQDSEARRLVREFSEAGKTVAAICHGPWLL 120

Query: 119 ISAGIAKGRTVTSWPSLQDDFKNAGSQWVDQEV----VRDENFVSSRKPADIPAFN 170
           I AG+A+G+T+TS+ S++ D  NAG+ WVD  V          ++SR P D+ AFN
Sbjct: 121 IDAGVARGKTLTSYSSVRIDLTNAGADWVDTRVKVCPANGWTLITSRNPGDLQAFN 176


>PH1704 [R] COG0693 Putative intracellular protease/amidase Pho Pyrococcus
           horikoshii
          Length = 166

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 5/170 (2%)

Query: 8   LKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVSVDGSLDN 67
           +KV  L  + FE  EL+ P   L+  G  V+I S +  ++ G KH   G  V VD + D 
Sbjct: 1   MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITG-KH---GYSVKVDLTFDK 56

Query: 68  ASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLLISAGIAKGR 127
            + +++ A++LPGG    + +RL  +A +  R      KP+ASICHG  +LISAG+ +GR
Sbjct: 57  VNPEEFDALVLPGGRAP-ERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGR 115

Query: 128 TVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPADIPAFNNEFMKLL 177
             TS+P ++DD  NAG +WVD EVV D N+VSSR PAD+ A+  EF+KLL
Sbjct: 116 KGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL 165