BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0087.p (370 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z2771 [L] COG0322 Nuclease subunit of the excinuclease complex E... 198 1e-50 ECs2447 [L] COG0322 Nuclease subunit of the excinuclease complex... 198 1e-50 ydjQ [L] COG0322 Nuclease subunit of the excinuclease complex Ec... 198 1e-50 STM1309 [L] COG0322 Nuclease subunit of the excinuclease complex... 182 1e-45 CAC3468 [L] COG0322 Nuclease subunit of the excinuclease complex... 81 4e-15 >Z2771 [L] COG0322 Nuclease subunit of the excinuclease complex EcZ Escherichia coli O157:H7 EDL933 Length = 295 Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 172/289 (59%), Gaps = 10/289 (3%) Query: 77 FNAPQPAAHRAATFSYPLHIDRASIEALPSACGVYILRGEGDQA-LYVGRSVNLRSRVLA 135 +P+ AA + YP H+ R+ + LP+ GVY+ GE D LY+G+SVN+RSRVL+ Sbjct: 5 LTSPRLEFEAAAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLS 63 Query: 136 HLHHAEDQFLIGRTRRIECLRTAGELGAALLENSLLRDLRPAHNKKQRAKRSLFTLRLDE 195 HL ++ ++ ++RRI + TAGE+GA LLE L+++ +P NK+ R R L L+L+E Sbjct: 64 HLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNE 123 Query: 196 QGQPLVAQVADHEFNRAGKLFGLYTSERAAQEALHKLVEHHGLCSIATGLEQGEGPGMAC 255 + +V + +F+RA LFGL+ + RAA +AL + + LC GLE G AC Sbjct: 124 KRVDVV-YAKEVDFSRAPNLFGLFANRRAALQALQSIADEQKLCYGLLGLEPL-SRGRAC 181 Query: 256 FGRQIRRCRGACTGEESHEQHQSRLLQALEDLRILPWPYAGPMGIVEQGDGWQQIHVIDQ 315 F ++RC GAC G+ESHE+H RL Q+LE LR++ WP+ G + + EQ Q H+I Sbjct: 182 FRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQN 241 Query: 316 WRYLGSLD--RQQRRLPARPAASLKGFDLDTYKLVIQPYLLGQLELRPL 362 W +LG+++ + L PA GFD D YK++ +P L G E+ L Sbjct: 242 WLWLGAVNSLEEATTLIRTPA----GFDHDGYKILCKPLLSGNYEITEL 286 >ECs2447 [L] COG0322 Nuclease subunit of the excinuclease complex Ecs Escherichia coli O157:H7 Length = 295 Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 172/289 (59%), Gaps = 10/289 (3%) Query: 77 FNAPQPAAHRAATFSYPLHIDRASIEALPSACGVYILRGEGDQA-LYVGRSVNLRSRVLA 135 +P+ AA + YP H+ R+ + LP+ GVY+ GE D LY+G+SVN+RSRVL+ Sbjct: 5 LTSPRLEFEAAAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLS 63 Query: 136 HLHHAEDQFLIGRTRRIECLRTAGELGAALLENSLLRDLRPAHNKKQRAKRSLFTLRLDE 195 HL ++ ++ ++RRI + TAGE+GA LLE L+++ +P NK+ R R L L+L+E Sbjct: 64 HLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNE 123 Query: 196 QGQPLVAQVADHEFNRAGKLFGLYTSERAAQEALHKLVEHHGLCSIATGLEQGEGPGMAC 255 + +V + +F+RA LFGL+ + RAA +AL + + LC GLE G AC Sbjct: 124 KRVDVV-YAKEVDFSRAPNLFGLFANRRAALQALQSIADEQKLCYGLLGLEPL-SRGRAC 181 Query: 256 FGRQIRRCRGACTGEESHEQHQSRLLQALEDLRILPWPYAGPMGIVEQGDGWQQIHVIDQ 315 F ++RC GAC G+ESHE+H RL Q+LE LR++ WP+ G + + EQ Q H+I Sbjct: 182 FRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQN 241 Query: 316 WRYLGSLD--RQQRRLPARPAASLKGFDLDTYKLVIQPYLLGQLELRPL 362 W +LG+++ + L PA GFD D YK++ +P L G E+ L Sbjct: 242 WLWLGAVNSLEEATTLIRTPA----GFDHDGYKILCKPLLSGNYEITEL 286 >ydjQ [L] COG0322 Nuclease subunit of the excinuclease complex Eco Escherichia coli K12 Length = 295 Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 172/289 (59%), Gaps = 10/289 (3%) Query: 77 FNAPQPAAHRAATFSYPLHIDRASIEALPSACGVYILRGEGDQA-LYVGRSVNLRSRVLA 135 +P+ AA + YP H+ R+ + LP+ GVY+ GE D LY+G+SVN+RSRVL+ Sbjct: 5 LTSPRLEFEAAAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLS 63 Query: 136 HLHHAEDQFLIGRTRRIECLRTAGELGAALLENSLLRDLRPAHNKKQRAKRSLFTLRLDE 195 HL ++ ++ ++RRI + TAGE+GA LLE L+++ +P NK+ R R L L+L+E Sbjct: 64 HLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNE 123 Query: 196 QGQPLVAQVADHEFNRAGKLFGLYTSERAAQEALHKLVEHHGLCSIATGLEQGEGPGMAC 255 + +V + +F+RA LFGL+ + RAA +AL + + LC GLE G AC Sbjct: 124 KRVDVV-YAKEVDFSRAPNLFGLFANRRAALQALQTIADEQKLCYGLLGLEP-LSRGRAC 181 Query: 256 FGRQIRRCRGACTGEESHEQHQSRLLQALEDLRILPWPYAGPMGIVEQGDGWQQIHVIDQ 315 F ++RC GAC G+ESHE+H RL Q+LE LR++ WP+ G + + EQ Q H+I Sbjct: 182 FRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQN 241 Query: 316 WRYLGSLD--RQQRRLPARPAASLKGFDLDTYKLVIQPYLLGQLELRPL 362 W +LG+++ + L PA GFD D YK++ +P L G E+ L Sbjct: 242 WLWLGAVNSLEEATTLIRTPA----GFDHDGYKILCKPLLSGNYEITEL 286 >STM1309 [L] COG0322 Nuclease subunit of the excinuclease complex Sty Salmonella typhimurium LT2 Length = 302 Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 164/286 (57%), Gaps = 12/286 (4%) Query: 78 NAPQPAAHRAATFSYPLHIDRASIEALPSACGVYILRGEGDQA-LYVGRSVNLRSRVLAH 136 +AP+ AA + YP H+ R + P+ GVYI E D LY+G+SVN+RSRVL+H Sbjct: 15 SAPRLEFEAAAIYEYPEHL-RPFLSEAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSH 73 Query: 137 LHHAEDQFLIGRTRRIECLRTAGELGAALLENSLLRDLRPAHNKKQRAKRSLFTLRLDEQ 196 L ++ ++ + RRI + TAGE+GA LLE L+++ +P NK+ R R L +L+L EQ Sbjct: 74 LRTPDEATMLRQARRISWICTAGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ 133 Query: 197 GQPLVAQVADHEFNRAGKLFGLYTSERAAQEALHKLVEHHGLCSIATGLEQGEGPGMACF 256 +V+ +F+ LFGL+ + RAA ++L L + LC GLE G ACF Sbjct: 134 KIEVVS-ARSVDFSHEPNLFGLFANRRAALQSLQNLADEQKLCYGLLGLE-PVSRGRACF 191 Query: 257 GRQIRRCRGACTGEESHEQHQSRLLQALEDLRILPWPYAGPMGIVEQGDGWQQIHVIDQW 316 ++RC GAC G+E+ + H RL +LE LR++ WP+ G + + E Q H+I+ W Sbjct: 192 RFALKRCAGACCGQETPQAHFLRLQASLERLRVVCWPWKGAIALKESRPQMTQFHIINNW 251 Query: 317 RYLG---SLDRQQRRLPARPAASLKGFDLDTYKLVIQPYLLGQLEL 359 +LG SLD + L PA GFD D YK++ +P + GQ E+ Sbjct: 252 LWLGAVPSLD-EAATLVRTPA----GFDQDGYKILCKPLMSGQYEI 292 >CAC3468 [L] COG0322 Nuclease subunit of the excinuclease complex Cac Clostridium acetobutylicum Length = 373 Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 19/198 (9%) Query: 98 RASIEALPSACGVYILRGEGDQALYVGRSVNLRSRVLAHL-----HHAEDQFLIGRTRRI 152 + I LPSA GVY+++ + +YVG+S NLRSRV ++ H ++ L+ + Sbjct: 4 KEKIRKLPSAPGVYLMKDSLNTIIYVGKSKNLRSRVQSYFVNSKSHSSKVLKLVKNLKDF 63 Query: 153 ECLRTAGELGAALLENSLLRDLRPAHNKKQRAKR--SLFTLRLDEQGQPLVAQVADHEFN 210 + + T E A LLE L++ ++P +N++ ++ + ++LDE+ P V ++ E Sbjct: 64 DYIVTDTEFEALLLECKLIKRIKPIYNRQMKSPKGYCYIKIKLDEK-YPSVEIKSNDE-- 120 Query: 211 RAGK--LFGLYTSERAAQEALHKLVEHHG-LCSIATGLEQGEGPGMACFGRQIRRCRGAC 267 R G+ FG YTS+ ++AL+ + EH LC+ ++ G C C G C Sbjct: 121 RVGESLYFGPYTSKSTVEKALYGIKEHMKILCTNSSKKASG------CLKYSTGLCLGMC 174 Query: 268 TGEESHEQHQSRLLQALE 285 T S E + S + + +E Sbjct: 175 TANPSFEYYSSLIEKIIE 192