BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0080.p (355 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5484 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 271 2e-72 CC3644 Non COG 254 3e-67 AGc1534 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 241 1e-63 SMc03176 [J] COG1236 Predicted exonuclease of the beta-lactamase... 234 3e-61 PAE3418 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 85 2e-16 >mll5484 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Mlo Mesorhizobium loti Length = 335 Score = 271 bits (692), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 155/333 (46%), Positives = 201/333 (60%), Gaps = 21/333 (6%) Query: 3 DMVVVRKEGLYCVPGDFYIDPWRPVARAVITHAHADHARVGHAHYLAAAPGADILRARLG 62 D++ R EGLYC PGDF+IDP RPV RA+ITH H+DHAR GH LA DI+ R G Sbjct: 5 DLLHPRPEGLYCPPGDFFIDPVRPVNRALITHGHSDHARSGHRSVLATQQTLDIMALRYG 64 Query: 63 ADIALDTLA--YGASLTHNGVRLSLHPAGHVLGSAQLRMEHQGQVWVASGDYKLEADGTC 120 D A T A G ++ + V +S HPAGHVLGSAQ+ +EHQG VASGDYK + D TC Sbjct: 65 EDFAGTTQAARLGETIALDSVSVSFHPAGHVLGSAQISVEHQGTRIVASGDYKRQKDATC 124 Query: 121 APFEPVRCHTFITESTFGMPIYRWQPQAEIFEEINAWWRANAAQ--GRASVLFCYAFGKA 178 APFEP+RC FITE+TFG+P++R P EEI A +AAQ R+ ++ YA GKA Sbjct: 125 APFEPIRCDVFITEATFGLPVFRHPPDT---EEI-ARLLKSAAQFPERSHLVGAYALGKA 180 Query: 179 QRILHGI-DASIG-PIVCHGAVEPLNRLYRQEGVALPETQTVSQGSPGSKSEGGKRSPSS 236 QR++ + DA P+ HGA+ L+ Y+ +G+ L + + EGGK Sbjct: 181 QRVMRLLRDAGYDRPLYIHGALARLSEYYQSQGIDLGVLEPAT-------VEGGK----D 229 Query: 237 AYAGSLVIAPPSAAGSPWMRRFGDYSDAFASGWMRLRGTRRRRGVDRGFVLSDHADWPAL 296 + G++V+ PPSA W RRF D FASGWMR+R ++ GV+ ++SDHADW L Sbjct: 230 DFTGAIVVGPPSAFADRWARRFPDPISCFASGWMRIRQRAKQGGVELPLIISDHADWDEL 289 Query: 297 QQAIAATQAERIIVTHGQVATMVRWLRQNGLDA 329 I T AE I VTHG+ +VRW G+ A Sbjct: 290 TATIKETGAEEIWVTHGREEALVRWCELEGIAA 322 >CC3644 Non COG Length = 342 Score = 254 bits (648), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 154/350 (44%), Positives = 193/350 (55%), Gaps = 26/350 (7%) Query: 2 QDMVVVRKEGLYCVPGDFYIDPWRPVARAVITHAHADHARVGHAHYLAAAPGADILRARL 61 +D++ R GLYC PGDFYIDP RPV RAV+TH HADHAR GH A I+ R Sbjct: 10 EDLLCPRPAGLYCPPGDFYIDPVRPVDRAVVTHGHADHARAGHGVVAATPETLAIMAVRY 69 Query: 62 GADIA--LDTLAYGASLTHNGVRLSLHPAGHVLGSAQLRMEHQGQVWVASGDYKLEADGT 119 G D A + + YG S T +GV ++L PAGHVLGSAQ + +G V SGDYK D T Sbjct: 70 GEDFAGRREPIPYGESFTRDGVSVTLVPAGHVLGSAQAVVRWKGLTMVVSGDYKRRRDPT 129 Query: 120 CAPFEPVRCHTFITESTFGMPIYRWQPQAEIFEEINAWWRANAA-QGRASVLFCYAFGKA 178 CA FEPV C FITE+TFG+P++R A EI + + A R ++ YA GKA Sbjct: 130 CARFEPVPCDVFITEATFGLPVFRHPDDAG---EIRSLLLSVAQFPDRCHLVGAYALGKA 186 Query: 179 QRILH-----GIDASIGPIVCHGAVEPLNRLYRQEGVALPETQTVSQGSPGSKSEGGKRS 233 QR++ G D +I HGA+E LN LY GV L G + Sbjct: 187 QRVIRLLREAGWDKTI---YVHGALERLNALYEAHGVDL-----------GPLAPATASG 232 Query: 234 PSSAYAGSLVIAPPSAAGSPWMRRFGDYSDAFASGWMRLRGTRRRRGVDRGFVLSDHADW 293 P A+AG +VIAPPSA W RRF D D FASGWMR+R R+RGV+ +LSDHADW Sbjct: 233 PKDAFAGQIVIAPPSAIADRWSRRFPDPVDCFASGWMRVRARARQRGVELPLILSDHADW 292 Query: 294 PALQQAIAATQAERIIVTHGQVATMVRWLRQNGLDAGAF-ATEYGDEAIE 342 L + + + +THG+ + RW + G+ A A Y DE E Sbjct: 293 DELTGTLDELRPGEVWITHGREEALERWCQLEGIPARALRLVGYEDEEGE 342 >AGc1534 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 352 Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 135/325 (41%), Positives = 187/325 (57%), Gaps = 18/325 (5%) Query: 10 EGLYCVPGDFYIDPWRPVARAVITHAHADHARVGHAHYLAAAPGADILRARLGADI--AL 67 +GLYC GDFYIDP RPVARA+ITH H+DHAR GH LA DI+R R G D + Sbjct: 28 KGLYCPAGDFYIDPVRPVARALITHGHSDHARAGHGAVLATRQTLDIMRIRYGEDFCGSE 87 Query: 68 DTLAYGASLTHNGVRLSLHPAGHVLGSAQLRMEHQGQVWVASGDYKLEADGTCAPFEPVR 127 + +G ++ NGV + HPAGHVLGSAQ+ +E G VASGDYK D TCAPFE V Sbjct: 88 QAVGFGETVEVNGVIVGFHPAGHVLGSAQISVEMNGLRIVASGDYKRGIDPTCAPFETVP 147 Query: 128 CHTFITESTFGMPIYRWQ-PQAEIFEEINAWWRANAAQGRASVLFCYAFGKAQRILHGI- 185 C FITE+TFG+P++ P+ EI + + + R ++ Y+ GKAQR++ + Sbjct: 148 CDVFITEATFGLPVFHHPLPRVEIGKLLTS---IKQFPDRTHLVGAYSLGKAQRVIRLLR 204 Query: 186 -DASIGPIVCHGAVEPLNRLYRQEGVALPETQTVSQGSPGSKSEGGKRSPSSAYAGSLVI 244 + PI HGA+ L Y +G+ L + + + ++S +A+ G++V+ Sbjct: 205 DNGYADPIYIHGALARLCDYYVSQGIDLGDLRPATL----------EKSNPAAFKGAIVV 254 Query: 245 APPSAAGSPWMRRFGDYSDAFASGWMRLRGTRRRRGVDRGFVLSDHADWPALQQAIAATQ 304 PPSA W RRF + AFASGWM +R ++ GV+ V+SDH DWP L + I Sbjct: 255 GPPSAFQERWARRFNEPLIAFASGWMMVRQRAKQGGVELPLVISDHCDWPELLETITEIG 314 Query: 305 AERIIVTHGQVATMVRWLRQNGLDA 329 + + VTHG+ +VRW G+ A Sbjct: 315 PQAVWVTHGREEALVRWCELQGIAA 339 >SMc03176 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Sme Sinorhizobium meliloti Length = 336 Score = 234 bits (597), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 137/328 (41%), Positives = 184/328 (56%), Gaps = 24/328 (7%) Query: 10 EGLYCVPGDFYIDPWRPVARAVITHAHADHARVGHAHYLAAAPGADILRARLGADI--AL 67 +GLYC GDFYIDP +PV RA+ITH H+DHAR GH H LA DI+R R G D A Sbjct: 12 KGLYCQHGDFYIDPVQPVERALITHGHSDHARAGHGHVLATRETLDIMRLRYGDDFCGAS 71 Query: 68 DTLAYGASLTHNGVRLSLHPAGHVLGSAQLRMEHQGQVWVASGDYKLEADGTCAPFEPVR 127 D +G +++ GVR+ PAGHVLGSAQ+ +E G V SGDYK D TC FEPV Sbjct: 72 DVARFGETISIGGVRVRFQPAGHVLGSAQISVEADGTRIVVSGDYKRRPDPTCPSFEPVA 131 Query: 128 CHTFITESTFGMPIYRW-QPQAEIFEEINAWWRANAAQGRASVLFCYAFGKAQRIL---- 182 C FITE+TFG+P++ + EI + + + RA V+ YA GKAQR++ Sbjct: 132 CDVFITEATFGLPVFHHPDDKGEIARLLQSLRQFPE---RAHVVGAYALGKAQRLIALIR 188 Query: 183 -HGIDASIGPIVCHGAVEPLNRLYRQEGVALPETQTVSQGSPGSKSEGGKRSPSSAYAGS 241 G D PI HGA+ L Y+ +G+ L + + + G P ++ + AG+ Sbjct: 189 QQGYDE---PIHIHGALARLCEYYQSQGIDLGDIRPATLG-PENRQD---------LAGA 235 Query: 242 LVIAPPSAAGSPWMRRFGDYSDAFASGWMRLRGTRRRRGVDRGFVLSDHADWPALQQAIA 301 +V+ PP+A W RRF D FASGWM +R ++RGV+ V+SDH DW L I Sbjct: 236 IVLGPPAAFAERWARRFADPLAIFASGWMLIRQRAKQRGVELPLVISDHCDWAELTATIR 295 Query: 302 ATQAERIIVTHGQVATMVRWLRQNGLDA 329 + VTHG+ +VRW + G+ A Sbjct: 296 EIAPAEVWVTHGREEALVRWCQLQGIPA 323 >PAE3418 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Pya Pyrobaculum aerophilum Length = 314 Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 86/323 (26%), Positives = 131/323 (40%), Gaps = 51/323 (15%) Query: 19 FYIDPWRPVARAV----ITHAHADHARVGHAH---YLAAAPGADILRARLGADIALD-TL 70 F +DP P+ V ITH H+DH HA+ +A + R G T+ Sbjct: 18 FVVDPTGPLTGPVDFVLITHGHSDHVS-KHAYRHTVVATRETFSAMSVRFGNPPPRRVTV 76 Query: 71 AYGASLTHNGVRLSLHPAGHVLGSAQLRMEHQGQVWVASGDYKLEADGTCAPFEPV-RCH 129 A G L GV++++ AGH+LGS E G + +GD+ EP+ R Sbjct: 77 APGNVLEIGGVQIAVLEAGHILGSVMYLAEVDGVQILVTGDFNTAGSILTDAAEPIERPD 136 Query: 130 TFITESTFGMPIYRWQPQAEIFEEINAWWRANAAQGRASVLFCYAFGKAQRILHGIDASI 189 + E+T+G P Y + +AE++EE ++G ++ Y GKAQ I + Sbjct: 137 VLVMEATYGDPSYVFPNRAEVYEEFLDVVERGISEGGVAI-SAYPLGKAQEIAKLLGNKA 195 Query: 190 GPIVCHGAVEPLNRLYRQEGVALPETQTVSQGSPGSKSEGGKRSPSSAYAGSLVIAPPSA 249 G H +V N+ + G P + +++ P Sbjct: 196 G---AHASVAKYNK---------------ALGIPTGNGD------------EVIVVPNLK 225 Query: 250 AGSPWMRRFGDYSDAFASGWM---RLRGTRRRRGVDRGFVLSDHADWPALQQAIAATQAE 306 A P +Y SGW RLR RGV G LSDH+D+P+L + A Sbjct: 226 AAPP------NYFKIDVSGWYADERLRKNAISRGV-YGIPLSDHSDFPSLVEFATAASPR 278 Query: 307 RIIVTHGQVATMVRWLRQNGLDA 329 + +G + R+LR+ GL A Sbjct: 279 LVYTVYGFSERLARYLRKIGLKA 301