BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0071.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM0592 [E] COG0765 ABC-type amino acid transport system, permeas... 177 2e-44 AF0232 [E] COG0765 ABC-type amino acid transport system, permeas... 176 3e-44 lin0840_2 [E] COG0765 ABC-type amino acid transport system, perm... 176 3e-44 alr3187_2 [E] COG0765 ABC-type amino acid transport system, perm... 175 7e-44 sll1270_2 [E] COG0765 ABC-type amino acid transport system, perm... 167 1e-41 >TM0592 [E] COG0765 ABC-type amino acid transport system, permease component Tma Thermotoga maritima Length = 216 Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 140/207 (67%), Gaps = 1/207 (0%) Query: 10 ESWPSLVHGTLVTVEITAASLVVGCVLGLLVGLGRLSPQRRVIYGLCTIYLTLVRGTPLL 69 ++ P L+ G L T+++T+ ++++G +G+ VG+GRLS R + Y ++Y+ +RGTPL+ Sbjct: 10 DNLPLLLKGALRTLQLTSLAVLIGLAIGIFVGMGRLSKYRIIRYP-SSVYVEFLRGTPLM 68 Query: 70 VQLFLWFFGLPHVGVILPAYVCGILGLGIYSGAYVSEIVRGAIQSIERGQMEAARSLGLP 129 VQLFL +FGLP +G+ + ++ LGI SGAYV+EIVR IQS+ +GQ EAARSLG+ Sbjct: 69 VQLFLVYFGLPELGLEFDRFTAAVIALGINSGAYVAEIVRAGIQSVPKGQYEAARSLGMS 128 Query: 130 YRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISVTYRSLET 189 + AM VILPQAF ++P LGNEFIAL K+S+L ++ +LM + I+S T+ S Sbjct: 129 HAQAMIYVILPQAFRHILPALGNEFIALAKDSSLAMVIGTVELMRSAQYIVSRTFMSFPI 188 Query: 190 YLAIALIYLLLTSVTTLILRRIEKVLR 216 Y +ALIY +T + +++ +E L+ Sbjct: 189 YGGVALIYFAITFSVSRLVKFVEGRLK 215 >AF0232 [E] COG0765 ABC-type amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 224 Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 89/189 (47%), Positives = 133/189 (70%), Gaps = 1/189 (0%) Query: 13 PSLVHGTLVTVEITAASLVVGCVLGLLVGLGRLSPQRRVIYGLCTIYLTLVRGTPLLVQL 72 P L G VT+++T S+ G ++G + GLGR+S + + + + T Y+ ++RGTPLLVQ+ Sbjct: 17 PDLAFGASVTLKLTLISIFFGLIIGTIAGLGRVS-KNPLPFAISTAYVEVIRGTPLLVQI 75 Query: 73 FLWFFGLPHVGVILPAYVCGILGLGIYSGAYVSEIVRGAIQSIERGQMEAARSLGLPYRM 132 + +FGLP +G+ L GI+ L I SGAY++EIVR I+SI GQMEAARSLG+ Y Sbjct: 76 LIVYFGLPAIGINLQPEPAGIIALSICSGAYIAEIVRAGIESIPIGQMEAARSLGMTYLQ 135 Query: 133 AMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISVTYRSLETYLA 192 AMR VI PQAF ++P LGNEFIAL+K+S+L+S+++I +L G +I++ T+ + +L Sbjct: 136 AMRYVIFPQAFRNILPALGNEFIALLKDSSLLSVISIVELTRVGRQIVNTTFNAWTPFLG 195 Query: 193 IALIYLLLT 201 +AL YL++T Sbjct: 196 VALFYLMMT 204 >lin0840_2 [E] COG0765 ABC-type amino acid transport system, permease component Lin Listeria innocua Length = 212 Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 146/210 (69%), Gaps = 2/210 (0%) Query: 10 ESWPSLVHGTLVTVEITAASLVVGCVLGLLVGLGRLSPQRRVIYGLCTIYLTLVRGTPLL 69 SWP+L+ G +T+ + SL++ ++G+ G ++S +++ G+ T+Y+ + RGTPL+ Sbjct: 4 SSWPALLAGMWLTIRLAVVSLIIAFIIGITFGFMKVS-NSKILRGIATVYVDIFRGTPLI 62 Query: 70 VQLFLWFFGLPH-VGVILPAYVCGILGLGIYSGAYVSEIVRGAIQSIERGQMEAARSLGL 128 VQ F ++FG+P + +P ++ G++ L + +GAY+ EIVRG IQS+++GQMEAARSLGL Sbjct: 63 VQAFFFYFGIPAALDFRMPVFLAGVIALSLNAGAYMVEIVRGGIQSVDKGQMEAARSLGL 122 Query: 129 PYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISVTYRSLE 188 P++ AM +V+LPQA MIP N+F+ +K+++++S + + +L G+ I++ T+ S Sbjct: 123 PHKKAMMKVVLPQAIRMMIPSFINQFVITLKDTSIMSAIGLVELTQSGKIIMARTFESTW 182 Query: 189 TYLAIALIYLLLTSVTTLILRRIEKVLRSE 218 T+L I ++YL++ ++ T + R+E+ LR++ Sbjct: 183 TWLIIGIMYLIVITILTKVSDRLERRLRND 212 >alr3187_2 [E] COG0765 ABC-type amino acid transport system, permease component Nos Nostoc sp. PCC 7120 Length = 240 Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 13/209 (6%) Query: 13 PSLVHGTLVTVEITAASLVVGCVLGLLVGLGRLS---PQRRVIYGLCTIYLTLVRGTPLL 69 P+L+ G LVT+++T S V+G + G L+ L RLS P R Y+ RGTPLL Sbjct: 20 PTLLQGALVTIQLTILSTVLGLICGTLIALTRLSQFTPARL----FARAYVDFFRGTPLL 75 Query: 70 VQLFLWFFGLPHVGVIL------PAYVCGILGLGIYSGAYVSEIVRGAIQSIERGQMEAA 123 VQ+F+ +FG+P + L +V G++ L + + AY++EIVR IQSIE GQ EAA Sbjct: 76 VQIFMIYFGIPALAQQLGFTFNFDRWVAGVIALSVNAAAYIAEIVRAGIQSIETGQTEAA 135 Query: 124 RSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISVT 183 +SLGL + MR VI PQAF RM+PPLGNEFI+L+K+++LV+++ +L +G+ I++ Sbjct: 136 KSLGLNPWLTMRLVIFPQAFRRMLPPLGNEFISLLKDTSLVAVIGFEELFRKGQLIVADN 195 Query: 184 YRSLETYLAIALIYLLLTSVTTLILRRIE 212 YR+ E Y A+A++YL LT + + +L R+E Sbjct: 196 YRAFEIYAAVAIVYLCLTLLASQVLSRLE 224 >sll1270_2 [E] COG0765 ABC-type amino acid transport system, permease component Syn Synechocystis Length = 255 Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 139/213 (65%), Gaps = 7/213 (3%) Query: 14 SLVHGTLVTVEITAASLVVGCVLGLLVGLGRLSPQRRVIYGLCTIYLTLVRGTPLLVQLF 73 +L G+++TV +TA S+ G + G V + +S + + + IY+ RGTP+LVQLF Sbjct: 34 NLFKGSILTVLLTAFSVFFGLIGGTGVAIALIS-DIKPLQLIFRIYVEFFRGTPMLVQLF 92 Query: 74 LWFFGLPHV------GVILPAYVCGILGLGIYSGAYVSEIVRGAIQSIERGQMEAARSLG 127 + +FGLP + G+ + + I+ L + AY++EI+RG IQSI++GQ EA SLG Sbjct: 93 IIYFGLPALFKEIGLGITIDRFPAAIIALSLNVAAYLAEIIRGGIQSIDQGQWEACESLG 152 Query: 128 LPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISVTYRSL 187 + M+ VI PQAF R++PPLGNEFI LIK+++L +++ +L EG+ I++ TYR+ Sbjct: 153 MSPWQTMKEVIFPQAFRRILPPLGNEFITLIKDTSLTAVIGFQELFREGQLIVATTYRAF 212 Query: 188 ETYLAIALIYLLLTSVTTLILRRIEKVLRSEGR 220 E Y+A+AL+YLLLT++++ + + +E + GR Sbjct: 213 EVYIAVALVYLLLTTISSFVFKWLENYMDPIGR 245