BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0068.p         (145 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1159 [T] COG0589 Universal stress protein UspA and related nu...    93   2e-19
RSc1359 [T] COG0589 Universal stress protein UspA and related nu...    91   8e-19
AGc878 [T] COG0589 Universal stress protein UspA and related nuc...    83   2e-16
MTH993 [T] COG0589 Universal stress protein UspA and related nuc...    68   6e-12
MA2866 [T] COG0589 Universal stress protein UspA and related nuc...    66   3e-11

>RSp1159 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 146

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAG 60
           MF +ILL TDGS  C +++  A+ LA + G  L   +   +  +++    +     +   
Sbjct: 1   MFTHILLPTDGSSQCTKAIDGALKLAHAAGCRLTAYTCIEDFPSMAYSGGAGECPYSHYM 60

Query: 61  EAGRARALASVEMITEMARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKA-RS 119
           E  +  A   ++ I E AR+EGV     V Q   PY  I+  A R  CD IFMAS   RS
Sbjct: 61  EQVQGYAKDCIDRIAERAREEGVEFDSDVTQFAEPYLGILDAARRHACDVIFMASHGHRS 120

Query: 120 TLGRLLMGSQTQKLLARSKVPVLVFR 145
             GRLL+G++T+K+L  + +PV+V+R
Sbjct: 121 LTGRLLIGNETRKVLTYAHIPVVVYR 146


>RSc1359 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 168

 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 1/145 (0%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAG 60
           MF++IL+ TDGS L  ++V  A+  AK+ G+ L   +           E+ V    A   
Sbjct: 25  MFQHILIPTDGSELSRKAVAGALDFAKTLGARLTAYTCLEEYPYTPFSEIVVETPQAFK- 83

Query: 61  EAGRARALASVEMITEMARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKARST 120
           E   A+A   ++ + + AR  G+ C   ++    PY  I+  AER  CD IFMAS  R  
Sbjct: 84  ERVEAQARVVLKDVEDTARAAGIDCDTDMSCFAVPYMGIIDAAERHGCDVIFMASHGRRG 143

Query: 121 LGRLLMGSQTQKLLARSKVPVLVFR 145
           L  LL+GS+TQK+L  + +PV+V+R
Sbjct: 144 LAGLLLGSETQKVLTHTAIPVIVYR 168


>AGc878 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 160

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAG 60
           MFK+IL+ TDGS L   ++    ALA+  G+ +  ++VS     ++    S   D+A   
Sbjct: 16  MFKHILIPTDGSPLAQIAIDQGFALAREAGAKVTVVTVSEPFHVIA----SDVEDIAAIA 71

Query: 61  EAGRARALASVEMITEM---ARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKA 117
           E    R   +  ++ +    A   G+ C   +A+ GRP E I+ +A+R  CD I MAS  
Sbjct: 72  EEEFHRCEEAEHLLRDTQAHAAAMGLDCEALLARAGRPDEAIIEIADRTGCDLIAMASHR 131

Query: 118 RSTLGRLLMGSQTQKLLARSKVPVLVFR 145
           R +   +L+GS T K+L  SK+PVLV+R
Sbjct: 132 RRSFIEMLLGSVTAKVLKNSKIPVLVYR 159


>MTH993 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Mth Methanothermobacter
           thermautotrophicus
          Length = 143

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAG 60
           M+  ILL TDGS+  N++ + AI +A+  G+ ++ L+V      + +P   +   + R  
Sbjct: 1   MYSKILLPTDGSKQANKAAEHAIWIARESGAEIIALTVMETSSLVGLPADDL---IIRLR 57

Query: 61  EAGRARALASVEMITEMARQEGVPCSVQV-AQGGRPYEEIMRVAEREHCDAIFMASKARS 119
           E     A  S+E + ++  + G    + V    G P E I+R  E+E  D + M +  + 
Sbjct: 58  EMLEEEASRSLEAVKKLVEESGADIKLTVRTDEGSPAEAILRTVEKEGVDLVVMGTSGKH 117

Query: 120 TLGRLLMGSQTQKLLARSKVPVLVFR 145
            L R L+GS  +K++  +  PVLV  
Sbjct: 118 GLDRFLLGSVAEKVVRSAGCPVLVVH 143


>MA2866 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Mac Methanosarcina
           acetivorans str.C2A
          Length = 152

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 10/145 (6%)

Query: 2   FKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAGE 61
           F+ I++ATDGS     +   AI LA+  G ++  + V   +       ++V  D  R  E
Sbjct: 6   FRKIMIATDGSICSRIAANYAIELARLSGGTVYAVYV---VSTDYFSSMAVDFDWERMNE 62

Query: 62  AGRARALASVEMIT---EMARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKAR 118
           A +    A+V  +    EM R +  P  ++    G P +E++R AE    D + M +  +
Sbjct: 63  ALKKEGHAAVNYVKRAGEMDRVDVAPILLE----GHPADELIRYAEDNEMDVVIMGTLGK 118

Query: 119 STLGRLLMGSQTQKLLARSKVPVLV 143
           + L RLL+GS  +K++   KVPV+V
Sbjct: 119 TGLDRLLLGSVAEKVVRHCKVPVMV 143