BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0043.p         (202 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VNG0662G [C] COG1845 Heme/copper-type cytochrome/quinol oxidase,...    69   1e-11
DR2620_2 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase,...    67   3e-11
alr2516 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ...    66   5e-11
alr0952 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ...    64   3e-10
slr1138 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ...    60   3e-09

>VNG0662G [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3
           Hbs Halobacterium sp. NRC-1
          Length = 285

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 7/187 (3%)

Query: 21  GPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSAPPDLLWGSL---NTVIM 77
           G ++   W  +G +  E   F  G A YF++R         SA PD   GSL   NT I+
Sbjct: 97  GGSTALRWGMIGFLGSEIATFGAGFAYYFFIRAGTQWSTAASAIPDGFLGSLVVVNTAIL 156

Query: 78  LLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEF----GSLNVNWSHNAY 133
           ++S    + A  A  + +  R    LV  L+  ++F+GG++ E+           S   +
Sbjct: 157 VVSSFTLHFAHVALRKGNRSRFLALLVSTLVLGVVFIGGQVYEYYEFIAHEGFTLSGGLF 216

Query: 134 GSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYWYFVVISWLAIY 193
            S  + L GLH +H+        ++ V    G   + R+  VS    YW+FV I W+ + 
Sbjct: 217 ESAFFGLTGLHGLHVTMGAVLIGIIMVRGLRGQYSADRHTSVSTVSMYWHFVDIVWIFLV 276

Query: 194 AVIYWGP 200
            V+Y G 
Sbjct: 277 VVLYAGS 283


>DR2620_2 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3
           Dra Deinococcus radiodurans
          Length = 244

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 34  IFIESTVFALGIASYFYLRGQAPAWPPDSAPPDLLWGSLNTVIMLLSCLPNYLASQAAHR 93
           I  E  +FA+ IA Y YLR    A PP +  P +   +LNT+I++ S    + A Q  H 
Sbjct: 78  IISEVALFAILIAGYVYLRVIGAAEPP-ALRPSIWLAALNTLILVTSSGVVHKAEQDLHH 136

Query: 94  FDLQRVRLGLVLCLLFSLLFLGGRIGEFGSLNV--NWSHNAYGSITWMLLGLHTVHLITD 151
                 RLGL + LL   +F+  ++ EF       +W  N + S  ++++GLH +H++  
Sbjct: 137 GRTSWGRLGLFITLLLGAIFMIFQVYEFSLFGTESDWRQNLWQSCFFIIVGLHGLHILIG 196

Query: 152 TFDTLVLTVLFFTGPVESKRYVDVSENGDYWYFVVISWLAIYAVIY 197
                +      TG ++   +  +     YW+ V + WL I A+ Y
Sbjct: 197 GTGIALPYYQLLTGKMDKYNHGSIVPASLYWHLVDVVWLLIVAIFY 242


>alr2516 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3
           Nos Nostoc sp. PCC 7120
          Length = 197

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 1/171 (0%)

Query: 28  WATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSAPPDLLWGSLNTVIMLLSCLPNYLA 87
           W  L  +  ES +F    A+Y + +G    WPP+    +L   ++NT I+L S +  +  
Sbjct: 22  WGLLTFLISESLMFGGFFATYLFFKGTTEVWPPEGTEVELFVPAINTAILLSSSVVIHFG 81

Query: 88  SQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFGSLNVNWSHNAYGSITWMLLGLHTVH 147
             A  + ++  +R+   L  +   +FL G++ E+ +L    + N + +  +++ G H +H
Sbjct: 82  DMAIKKGNVWGMRIWYFLTAIMGAVFLAGQVYEYQNLGYGLTANVFANCFYIMTGFHGLH 141

Query: 148 LITDTFDTLVLT-VLFFTGPVESKRYVDVSENGDYWYFVVISWLAIYAVIY 197
           +       L +      +G     ++  +     YW+FV I W+ ++ ++Y
Sbjct: 142 VFIGLLLILGVLWRSRRSGHYSETKHTGIEMAEIYWHFVDIIWIVLFTLVY 192


>alr0952 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3
           Nos Nostoc sp. PCC 7120
          Length = 207

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 37  ESTVFALGIASYFYLRGQAPAWPPDSAPP-DLLWGSLNTVIMLLSCLPNYLASQAAHRFD 95
           E  +F     +Y   R   P WPP   P  +LL   +NTV ++ S    + A  A  + D
Sbjct: 43  EGMIFLGLFGAYLAFRSTLPVWPPAGTPELELLLPGVNTVNLIASSFVMHNADTAIKKND 102

Query: 96  LQRVRLGLVLCLLFSLLFLGGRIGEFGSLNVNWSHNAYGSITWMLLGLHTVHLITDTFDT 155
            + +RL L +      +FL G++ E+  L    + N + S  ++L G H +H+   T   
Sbjct: 103 TKGMRLWLAITAAMGAIFLVGQVYEYTHLEFGLTTNLFASAFYVLTGFHGLHV---TIGV 159

Query: 156 LVLTVLFF----TGPVESKRYVDVSENGDYWYFVVISWLAIYAVIY 197
           L +  + +     G   S+++  +     YW+FV + W+ ++ ++Y
Sbjct: 160 LAIVAVLWRSRTQGHYSSEKHFGIEAAEIYWHFVDVIWIILFGLLY 205


>slr1138 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3
           Syn Synechocystis
          Length = 233

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 37  ESTVFALGIASYFYLRGQAPAWPPDSAPP-DLLWGSLNTVIMLLSCLPNYLASQAAHRFD 95
           ES +F     +Y   R   PAWPP+  P  +LL   +N++I++ S    +    A    D
Sbjct: 69  ESAIFLGLFTAYLIYRSVMPAWPPEGTPELELLLPGVNSIILISSSFVMHKGQAAIRNND 128

Query: 96  LQRVRLGLVLCLLFSLLFLGGRIGEFGSLNVNWSHNAYGSITWMLLGLHTVHLITDTFDT 155
              ++    +     ++FL G++ E+  L +  + N + S  ++L G H +H+   TF  
Sbjct: 129 NAGLQKWFGITAAMGIIFLAGQMYEYFHLEMGLTTNLFASCFYVLTGFHGLHV---TFGL 185

Query: 156 L-VLTVLFFT---GPVESKRYVDVSENGDYWYFVVISWLAIYAVIY 197
           L +L+VL+ +   G      +  V     YW+FV + W+ ++ ++Y
Sbjct: 186 LLILSVLWRSRQPGHYSRTSHFGVEAAELYWHFVDVVWIVLFILVY 231