BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0038.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0438 [R] COG2391 Predicted transporter component Rso Ralstoni...    91   8e-19
BMEII0809 [R] COG2391 Predicted transporter component Bme Brucel...    74   6e-14
SMa1053 [R] COG2391 Predicted transporter component Sme Sinorhiz...    74   9e-14
AGl2724 [R] COG2391 Predicted transporter component Atu Agrobact...    67   1e-11
XF0766 [R] COG2391 Predicted transporter component Xfa Xylella f...    67   1e-11

>RSc0438 [R] COG2391 Predicted transporter component Rso Ralstonia
           solanacearum
          Length = 144

 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 63/87 (72%), Gaps = 2/87 (2%)

Query: 2   FLLGLLAAPLLMR-LGASLPPIHIDAGLGQIVLAGLLVGLGTRYGAGCTSGHGVCGLSRF 60
           FL GL+ AP+L   LG  L P  I AG G+++ AG +VGLGTRY  GCTSGHGVCGLSR 
Sbjct: 58  FLAGLIGAPVLAAALGRPLVP-DIGAGWGEVLAAGFVVGLGTRYAGGCTSGHGVCGLSRG 116

Query: 61  SLRSAVATVCFMMAGFVSVYLLRHVAG 87
           SLRS VAT  FM AG ++V++ RHV G
Sbjct: 117 SLRSLVATATFMAAGVLTVFVQRHVLG 143


>BMEII0809 [R] COG2391 Predicted transporter component Bme Brucella melitensis
          Length = 135

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 1   MFLLGLLAAPLLM-RLGASLPPIHIDAGLGQIVLAGLLVGLGTRYGAGCTSGHGVCGLSR 59
           +F++GLL  P++   +  + P   I A    I++AGLLVG+GTR G+GCTSGHG+ GL+R
Sbjct: 49  LFIIGLLMGPVVYAWIFGAFPATDIAASWPVILIAGLLVGVGTRMGSGCTSGHGIVGLAR 108

Query: 60  FSLRSAVATVCFMMAGFVSVYL 81
           FS RS VAT+ F++AG ++  L
Sbjct: 109 FSRRSLVATIVFLIAGVIAASL 130


>SMa1053 [R] COG2391 Predicted transporter component Sme Sinorhizobium
           meliloti
          Length = 136

 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 48/69 (69%)

Query: 18  SLPPIHIDAGLGQIVLAGLLVGLGTRYGAGCTSGHGVCGLSRFSLRSAVATVCFMMAGFV 77
           S P + I AG   I++AGLLVG G+R G+GCTSGHGV GL+R S RS VA   F+ AG  
Sbjct: 67  SWPAVQITAGWPLIIIAGLLVGFGSRMGSGCTSGHGVLGLARVSPRSMVAVATFLTAGVA 126

Query: 78  SVYLLRHVA 86
           +V LLR +A
Sbjct: 127 AVALLRGLA 135


>AGl2724 [R] COG2391 Predicted transporter component Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 135

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 2   FLLGLLAAPLLMR-LGASLPPIHIDAGLGQIVLAGLLVGLGTRYGAGCTSGHGVCGLSRF 60
           FL GLLA P L   +    P + +      I++AGLLVG GTR G+GCTSGHG+ GL+RF
Sbjct: 50  FLSGLLAGPYLYAAVFGRFPAVTVVTPWPLIIIAGLLVGFGTRMGSGCTSGHGIMGLARF 109

Query: 61  SLRSAVATVCFMMAG 75
           S RS  AT  F+++G
Sbjct: 110 SRRSIAATATFLISG 124


>XF0766 [R] COG2391 Predicted transporter component Xfa Xylella fastidiosa
           9a5c
          Length = 135

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 6/85 (7%)

Query: 2   FLLGLLAAPLLMR-LGASLPPIHIDAGLGQIVLAGLLVGLGTRYGAGCTSGHGVCGLSRF 60
           F++GL+  PL+   +    P + + A    I++AGLLVGLGTR  AGCTSGHG+ G++R 
Sbjct: 50  FVVGLVLGPLVFSVIFDRFPSVTVAATWPTIIVAGLLVGLGTRMSAGCTSGHGIAGIARH 109

Query: 61  SLRSAVATVCFMMAG-----FVSVY 80
           S RS VAT  F+++G     F+ VY
Sbjct: 110 SPRSIVATAIFLISGMATATFMGVY 134