BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0165.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2444 [L] COG2003 DNA repair proteins Rso Ralstonia solanacearum 251 1e-66 PA5319 [L] COG2003 DNA repair proteins Pae Pseudomonas aeruginosa 212 6e-55 VC0217 [L] COG2003 DNA repair proteins Vch Vibrio cholerae 193 2e-49 PM1152 [L] COG2003 DNA repair proteins Pmu Pasteurella multocida 190 2e-48 NMA1448 [L] COG2003 DNA repair proteins NmA Neisseria meningitid... 189 5e-48 >RSc2444 [L] COG2003 DNA repair proteins Rso Ralstonia solanacearum Length = 224 Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 162/224 (72%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +RPRE++ GPAALSDAELLAIFLRVG+PGK+AV+LA E + FGSL + Sbjct: 1 MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A R+ G+GPA QL A+LE++RRA+ ++ + L S ++V D+L+L L HR Sbjct: 61 CHASRREFSAIHGMGPAKYAQLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 QE F LFLDVR++LI EELF+GTLT++ VYPRE+ K AL HNA+++IL+HNHP+G Sbjct: 121 PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALHHNASALILSHNHPTGHV 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT L AL ++D+R+LDH +V +YSF +HGKM Sbjct: 181 EPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM 224 >PA5319 [L] COG2003 DNA repair proteins Pae Pseudomonas aeruginosa Length = 224 Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 109/224 (48%), Positives = 149/224 (66%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP+ +RPRE++ + G AALSDAELLAIFLR G+ G +AVEL+ + FG L + Sbjct: 1 MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRAL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 L A GLG A QL+AVLEM RR + ++R +L S +AV DYLK L H Sbjct: 61 LEADLASFCGHLGLGVAKYAQLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHE 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 + E F LFLD R++++ E LF+G++ ++VYPR+V+K L HNAA++IL HNHPSGD Sbjct: 121 QHEVFACLFLDTRHRVLSFEVLFQGSIDGASVYPRQVVKRTLAHNAAALILTHNHPSGDA 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 PS D +LTA L EAL ++D+R+LDHF++ S A++G + Sbjct: 181 RPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL 224 >VC0217 [L] COG2003 DNA repair proteins Vch Vibrio cholerae Length = 224 Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/222 (47%), Positives = 144/222 (64%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M + P E PRE++ Q GP +LSDAELLAIFLR G G N + LA ++ FGSL + Sbjct: 1 MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRAL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A + KGLG A QL+AVLEM++R + ++ + L S + YL +L R Sbjct: 61 FCASKEQFCRHKGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 ++E F LFLD ++++I E LF+GT+ ++VYPREV+K AL HNAA+VILAHNHPSG Sbjct: 121 QREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKRALHHNAAAVILAHNHPSGVA 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHG 222 EPS D R+T L +AL +++IR+LDHFVV + SFA+ G Sbjct: 181 EPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERG 222 >PM1152 [L] COG2003 DNA repair proteins Pmu Pasteurella multocida Length = 224 Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/210 (43%), Positives = 141/210 (67%) Query: 12 PRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGVLGAVERDLPLG 71 PRE++ + G AL+D ELLAIFLR GI G + ++L+ +Q F SL G++ A + + Sbjct: 12 PREKLLRFGAPALTDEELLAIFLRTGIKGCSVMQLSRHVLQHFHSLRGLMSATQTEFCQL 71 Query: 72 KGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHREQECFVALFLD 131 KGLG QL+A EMS+R + +++L + ++ V YL+ L ++E+E F LFLD Sbjct: 72 KGLGITQFIQLQACTEMSKRYLQEELKLTQAFKNSENVRFYLQATLENKEREIFQVLFLD 131 Query: 132 VRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDPEPSDHDLRLTA 191 +++LI EE+F GT+ + ++PRE+IK+AL NAA++ILAHNHPSG+PEPS D +T Sbjct: 132 NQHRLIKQEEMFLGTINCTTIHPREIIKSALFCNAAALILAHNHPSGNPEPSASDKMVTT 191 Query: 192 ALDEALQMMDIRLLDHFVVAGTRLYSFADH 221 + A ++++IR+LDHFV+ YSFA++ Sbjct: 192 KIQAAAELVEIRILDHFVIGKGCYYSFAEN 221 >NMA1448 [L] COG2003 DNA repair proteins NmA Neisseria meningitidis Z2491 Length = 225 Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 139/224 (62%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I WP+ +RPRE++ + G AALSDAELLAI LRVG G +AV+LA +Q FGSL + Sbjct: 1 MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 + A L KG+G A+ TQ V E+ RR + +++ +L+ V DYL+ L Sbjct: 61 MSAEVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQE 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 + E VAL L+ +N+LI EL +GT+ ++ +Y RE++K AL A S+I+AHNHP G P Sbjct: 121 KVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKLALDEYADSLIIAHNHPGGSP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D+ T L +A+ ++D+ LLDHF+V + SF G M Sbjct: 181 EPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLM 224