BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0163.p         (55 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2446 [J] COG0267 Ribosomal protein L33 Rso Ralstonia solanace...    96   2e-20
NMB0322 [J] COG0267 Ribosomal protein L33 Nme Neisseria meningit...    84   9e-17
NMA2165 [J] COG0267 Ribosomal protein L33 NmA Neisseria meningit...    84   9e-17
YPO0051 [J] COG0267 Ribosomal protein L33 Ype Yersinia pestis          82   2e-16
rpmG [J] COG0267 Ribosomal protein L33 Eco Escherichia coli K12        82   4e-16

>RSc2446 [J] COG0267 Ribosomal protein L33 Rso Ralstonia solanacearum
          Length = 56

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/54 (87%), Positives = 49/54 (90%)

Query: 2  AKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          +K GRDKIKLESTAGTGHFYTTTKNKRT PEK+ IMKFDP ARKHV YKETKIK
Sbjct: 3  SKGGRDKIKLESTAGTGHFYTTTKNKRTKPEKMEIMKFDPVARKHVAYKETKIK 56


>NMB0322 [J] COG0267 Ribosomal protein L33 Nme Neisseria meningitidis MC58
          Length = 51

 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 44/50 (88%)

Query: 6  RDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          RDKIKLES+AGTGHFYTTTKNKRT P K+ I KFDP ARKHV YKETK+K
Sbjct: 2  RDKIKLESSAGTGHFYTTTKNKRTMPGKLEIKKFDPVARKHVVYKETKLK 51


>NMA2165 [J] COG0267 Ribosomal protein L33 NmA Neisseria meningitidis
          Z2491
          Length = 51

 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 44/50 (88%)

Query: 6  RDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          RDKIKLES+AGTGHFYTTTKNKRT P K+ I KFDP ARKHV YKETK+K
Sbjct: 2  RDKIKLESSAGTGHFYTTTKNKRTMPGKLEIKKFDPVARKHVVYKETKLK 51


>YPO0051 [J] COG0267 Ribosomal protein L33 Ype Yersinia pestis
          Length = 55

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 45/55 (81%)

Query: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          MAK  R+KIKL S+AGTGHFYTTTKNKRT PEK+ + KFDP  R+HV YKE KIK
Sbjct: 1  MAKGVREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVLYKEAKIK 55


>rpmG [J] COG0267 Ribosomal protein L33 Eco Escherichia coli K12
          Length = 55

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 45/55 (81%)

Query: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          MAK  R+KIKL S+AGTGHFYTTTKNKRT PEK+ + KFDP  R+HV YKE KIK
Sbjct: 1  MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK 55