BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0142.p         (71 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3408 [E] COG1126 ABC-type polar amino acid transport system, ...   115   2e-26
L37916 [E] COG1126 ABC-type polar amino acid transport system, A...    97   8e-21
lin2353 [E] COG1126 ABC-type polar amino acid transport system, ...    96   2e-20
SA1674 [E] COG1126 ABC-type polar amino acid transport system, A...    93   2e-19
SP0824 [E] COG1126 ABC-type polar amino acid transport system, A...    92   3e-19

>RSc3408 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Rso Ralstonia solanacearum
          Length = 253

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 61/71 (85%)

Query: 1   VGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHAR 60
           VG+VL VMR LA +GMTMIVVTHEMGFAREVADRVCFLHSG+IVE G AAQVL  P+  R
Sbjct: 172 VGDVLEVMRALAREGMTMIVVTHEMGFAREVADRVCFLHSGTIVEEGPAAQVLGAPRQPR 231

Query: 61  TQDFLRRVIGK 71
           TQDFLRRV+ K
Sbjct: 232 TQDFLRRVLHK 242


>L37916 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Lla Lactococcus lactis
          Length = 244

 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 54/69 (78%)

Query: 1   VGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHAR 60
           VGEVLAVM+ LA +GMTM+VVTHEMGFA+ VADRV F+  G+IVE G  AQV   P+  R
Sbjct: 176 VGEVLAVMQELAKEGMTMVVVTHEMGFAKTVADRVLFMADGTIVEQGKPAQVFDSPKEKR 235

Query: 61  TQDFLRRVI 69
           TQDFL +V+
Sbjct: 236 TQDFLAKVL 244


>lin2353 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Lin Listeria innocua
          Length = 241

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 55/69 (79%)

Query: 1   VGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHAR 60
           VGEVL+VM++LA +GMTM+VVTHEMGFAREVADRV F+ +G I E G   +V   PQ+ R
Sbjct: 172 VGEVLSVMKSLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQGTPEEVFGNPQNDR 231

Query: 61  TQDFLRRVI 69
           T+DFL +V+
Sbjct: 232 TKDFLGKVL 240


>SA1674 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Sau Staphylococcus aureus N315
          Length = 242

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 55/69 (79%)

Query: 1   VGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHAR 60
           VG+VL VM+ LA +GMTM+VVTHEMGFA++V+D+V F+  G +VESG   ++  +PQH R
Sbjct: 174 VGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHER 233

Query: 61  TQDFLRRVI 69
           TQ+FL RV+
Sbjct: 234 TQNFLARVL 242


>SP0824 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Spn Streptococcus pneumoniae TIGR4
          Length = 244

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 52/69 (75%)

Query: 1   VGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHAR 60
           VGEVLAVM+ LA  GMTM++VTHEMGFAREVADRV F+  G +VE G   Q+  + Q  R
Sbjct: 176 VGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMADGVVVEDGTPEQIFEQTQGQR 235

Query: 61  TQDFLRRVI 69
           T+DFL +V+
Sbjct: 236 TKDFLSKVL 244