BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0138.p (263 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3411 [K] COG1414 Transcriptional regulator Rso Ralstonia sola... 375 e-104 Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacteriu... 157 3e-38 RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia sola... 147 2e-35 BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella mel... 145 1e-34 SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium... 139 7e-33 >RSc3411 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum Length = 262 Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust. Identities = 176/262 (67%), Positives = 216/262 (82%), Gaps = 1/262 (0%) Query: 1 MNEPDDTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETL 60 M +PDD A +LLFNQSLEKGLAVL AFNAQ RTMT+ +VA+ GI+KSSAQRMV+TLE L Sbjct: 1 MIQPDD-APNLLFNQSLEKGLAVLGAFNAQRRTMTIAEVAAVAGINKSSAQRMVYTLEHL 59 Query: 61 GYICKHPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEM 120 GY+ KHPKTRRYQLTP M++G+NYLAAD L+DVANPFL+EL +T ET LTEP EM Sbjct: 60 GYLRKHPKTRRYQLTPAAMKIGFNYLAADTLIDVANPFLAELTKVTTETSCLTEPDQREM 119 Query: 121 VYVARFVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRT 180 VYVARFV+++F+P+HMPIGSRIPMYCTASGRAYLSAL EA+AI+E+SER HT HTRT Sbjct: 120 VYVARFVSAQFVPVHMPIGSRIPMYCTASGRAYLSALPEPEARAIVETSERVAHTMHTRT 179 Query: 181 DVEDIMQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEA 240 +V DI+ L +R+RG+A NREELFLGDM++A+P+ +P+ ++H+VAPT RW+ E+ Sbjct: 180 EVADILATLREARQRGYAINREELFLGDMTVAAPIVGGNGRPLGAIHLVAPTGRWTAEDM 239 Query: 241 EKKLGPLVLECARAISNSVRTL 262 E KLGP +L+CARAIS SVR L Sbjct: 240 EAKLGPPLLQCARAISTSVRAL 261 >Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacterium glutamicum Length = 255 Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 154/250 (61%), Gaps = 2/250 (0%) Query: 13 FNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRY 72 F QS +GL+V+R+F+A + + TL +VAS TG+S+++A+R +HTL LGY + R+ Sbjct: 8 FVQSFARGLSVIRSFSADNPSQTLSEVASQTGLSRATARRFLHTLTDLGYAVNNDS--RF 65 Query: 73 QLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFI 132 QLTP+V+E+G +YL+A L +A P L L+ GE+ +++ +++YV R + + Sbjct: 66 QLTPRVLELGASYLSALSLPAIAQPRLEVLSRQVGESSSMSVLDGTDIIYVCRVPVRRIM 125 Query: 133 PIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAAS 192 +++ IG+R P Y T+ GR L+ L EE +L ++ T + T + I + + A+ Sbjct: 126 TVNITIGTRFPAYATSMGRIMLANLPEEELDEMLAAAPPEQLTTRSLTSIASIREEIIAT 185 Query: 193 RERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLGPLVLECA 252 RERG++ +EL G S+A+P+ N++ + VAS++V ++ SVE+ K + P +LE A Sbjct: 186 RERGWSLVDQELEPGLRSLAAPITNAQGEVVASINVSTQSASHSVEDIRKLVLPQLLETA 245 Query: 253 RAISNSVRTL 262 +AIS + L Sbjct: 246 QAISTDLSAL 255 >RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum Length = 275 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 153/258 (59%), Gaps = 5/258 (1%) Query: 4 PDDTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYI 63 P + SD + QS +GL+V+RAFNA+ TL +VA ATG++++ A+R++ TL +LGY+ Sbjct: 19 PAEKPSDS-YVQSFARGLSVIRAFNAERPAQTLSEVAEATGLTRAGARRILLTLVSLGYV 77 Query: 64 CKHPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYV 123 + R ++LTP+++++G+ YL + ++A P + EL E+ + + E+VYV Sbjct: 78 SF--EGRLFRLTPRILDLGFAYLTSMPFWNLAEPVMEELVQTVHESCSASVLDGTEIVYV 135 Query: 124 ARFVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVE 183 R K I +++ +GSR+P +CT+ GR LS L + +L S+R T T T+V+ Sbjct: 136 LRVPTQKIIALNLSVGSRLPAFCTSMGRVLLSGLPEDRLDIVLRESDRRPRTQRTITEVD 195 Query: 184 DIMQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKK 243 + ++A R +G+A +EL G +S+++P+ N +A++++ +R S + ++ Sbjct: 196 ALKDVIAGVRAQGWALVDQELEEGLISLSTPIRNRAGDIIAAMNISGQANRTSARQMTRQ 255 Query: 244 -LGPLVLECARAISNSVR 260 LGPL + A IS+ VR Sbjct: 256 FLGPLQ-QAAERISSMVR 272 >BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 256 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 136/248 (54%), Gaps = 2/248 (0%) Query: 13 FNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRY 72 F KGL V+ AF +++ DV+ TG+ +++A+R + TL LGY K + Sbjct: 6 FVGGFAKGLRVIEAFGEDRPRLSIADVSKITGLDRATARRCLLTLAELGYAEYDGKF--F 63 Query: 73 QLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFI 132 L P+++ +G+ YL+ L + P L L+ GE+ + + E+VY+AR + I Sbjct: 64 MLLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSVGESASASVLDGAEIVYIARASQMRVI 123 Query: 133 PIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAAS 192 I++ GSR+P YC + GR L+ L+ EA+ ILE +E TP T+ D E +M+ L Sbjct: 124 SINLMAGSRLPAYCASMGRVLLAWLDESEARTILEQTELRARTPFTQKDPEKLMEELRRI 183 Query: 193 RERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLGPLVLECA 252 R +GFA N +EL LG SIA PVFN VA++++ AP + V + ++ P +L+ Sbjct: 184 RAQGFAVNDQELELGLRSIAVPVFNHRGAVVAALNIGAPVAHVEVSDLVGRILPEMLKIQ 243 Query: 253 RAISNSVR 260 + + +R Sbjct: 244 SELRSMLR 251 >SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti Length = 251 Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 133/243 (54%), Gaps = 2/243 (0%) Query: 13 FNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRY 72 F +GL V+ AF +++ D A TG+ +++ +R + TL LGY K + Sbjct: 6 FVSGFARGLKVIEAFGEAQPRLSIADAAKITGLDRATVRRSLLTLSQLGYADYDGKF--F 63 Query: 73 QLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFI 132 LTPK + +G+ YL+A L + P+L +LA G++ + + E+VYVAR + + Sbjct: 64 TLTPKTLRLGHAYLSATPLPTIVQPYLDQLAEKAGQSASASVLDGTEIVYVARASQRRVM 123 Query: 133 PIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAAS 192 I++ GSR+P YC + GR L+AL EA+ IL SE +TP TRTD E+++ L Sbjct: 124 SINLTPGSRLPAYCASMGRVLLAALPEAEAREILGRSELKANTPLTRTDPEELLTELRRV 183 Query: 193 RERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLGPLVLECA 252 R+ G+A +EL LG SIA PV N + +A++++ A + E ++ PL+ E Sbjct: 184 RDEGYAIIDQELELGLCSIAVPVANDRGQVLAALNIGASAAHVPAREMAERFLPLLRETQ 243 Query: 253 RAI 255 A+ Sbjct: 244 AAL 246