BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0122.p         (239 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0031 [S] COG3416 Uncharacterized protein conserved in bacteri...   169   5e-42
XF0813 [S] COG3416 Uncharacterized protein conserved in bacteria...   127   2e-29
AGc4127 Non COG                                                        73   6e-13

>RSp0031 [S] COG3416 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 215

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/237 (48%), Positives = 142/237 (59%), Gaps = 28/237 (11%)

Query: 1   MSPQETQALQDFLQQLTEVRGISKDPQADAMIAAAVARQPDAAYLLVQRALLVEQALNAA 60
           M+PQE QAL+ FL QLT+ +  +KDPQA+A IA AVARQPDAAYLLVQRA+L++QAL  A
Sbjct: 1   MTPQELQALESFLAQLTQAQAGTKDPQAEARIAEAVARQPDAAYLLVQRAMLLDQALAGA 60

Query: 61  KAQVAALQSQVQALQAGGAREPGFLD-GNAWGRAATASRPQAYGSAAPAYAAPAAPAYQA 119
           K Q+A LQ+++Q  QA G+    FLD    WG+ A ++ P A  S      AP APA Q 
Sbjct: 61  KTQIAQLQTRLQTAQATGSG--AFLDPAGTWGQHAGSTPPPAMAS------APVAPAAQ- 111

Query: 120 APAPAPAPSPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGNGGSGFAHQNG 179
                  PS  SGF G G+ S LG++A TAAGVAGGAFL+QGIE LF  N G+GF  Q  
Sbjct: 112 -------PS-RSGFLGDGVRSTLGSIATTAAGVAGGAFLFQGIESLFRHNSGTGFLGQPA 163

Query: 180 LSAPVENIENTTVNNYYGSDADRSSDRASSDGNDFGSSNDLADLGNVDLDDSGGYDD 236
           +   +   E T +NNY   D D  +    +D    G S     L +  LDD    DD
Sbjct: 164 MG--MLPTETTVINNY---DDDHDAPALRTDTASRGDS-----LLDTSLDDGNFADD 210


>XF0813 [S] COG3416 Uncharacterized protein conserved in bacteria Xfa
           Xylella fastidiosa 9a5c
          Length = 218

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/227 (42%), Positives = 120/227 (52%), Gaps = 15/227 (6%)

Query: 1   MSPQETQALQDFLQQLTEVRGISKDPQADAMIAAAVARQPDAAYLLVQRALLVEQALNAA 60
           M+P E + L DFL +L       KDPQA+A+I   +A  PDAAYLLVQRALL+EQAL +A
Sbjct: 1   MTPYEQKLLDDFLTRLRGAGESVKDPQAEALICERLAGHPDAAYLLVQRALLLEQALASA 60

Query: 61  KAQVAALQSQVQALQAGGAREPGFLDGNAWGRAATASRPQAYGSAAPAYAAPAAPAYQAA 120
           + Q+A LQ Q  A    GA    FL   AWG   TA    A      A  +     + + 
Sbjct: 61  QTQIAKLQ-QAAAGHDAGAGSGSFLGQAAWGTQQTAPPTVAPPPPPAAPPSWRERLFGST 119

Query: 121 PAPAPAPSPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGN-GGSGFAHQNG 179
           PAP    +PS+        S LGT A+TAAGVAGG FL+QG+EH+F G+ G SG    N 
Sbjct: 120 PAPVQQAAPSAA------SSFLGTAASTAAGVAGGMFLFQGLEHMFGGHQGQSGGLFGNA 173

Query: 180 LSAPVENI-ENTTVNNYYGSDADRSSDRASSDGNDFGSSNDLADLGN 225
            + P + I EN   NNYY       +  + SD   F    DL D  N
Sbjct: 174 DNTPQQTIVENVVTNNYY------DTGTSISDAGGFADDTDLFDNDN 214


>AGc4127 Non COG
          Length = 265

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 33/225 (14%)

Query: 1   MSPQETQALQDFLQQLTEVRGISKDPQADAMIAAAVARQPDAAYLLVQRALLVEQALNAA 60
           MSP+E+Q L+    +        +D +A+ +IA AV  QP A Y L Q  ++ E+ L AA
Sbjct: 18  MSPEESQLLKGLFDRTKTASATPRDREAETLIADAVRDQPAAPYYLAQAVIVQEKGLEAA 77

Query: 61  KAQVAALQSQVQALQAGG-----AREPGFLDGNAWGRAATAS--------------RPQA 101
            A +  L+ ++ AL++GG     A + GFL  + +G                    R   
Sbjct: 78  AAHIKQLEDRIHALESGGSAPQAAAQGGFLS-SIFGTGQPQPPAPAPAPAAAPGSWRNDT 136

Query: 102 YGSAAPAYAAPAA--PAYQAAPAPAPAPSPSSGFFGGGMGSMLGTVAATAAGVAGGAFLY 159
            G  A  + APAA   A   +  PA       GF  G +G        TAAGVAGG  L 
Sbjct: 137 AGQTAGPWGAPAAQQSAGPWSQQPAAVGRSGGGFLQGALG--------TAAGVAGGMLLA 188

Query: 160 QGIEHLFNGNG---GSGFAHQNGLSAPVENIENTTVNNYYGSDAD 201
             +  +F  +    G G     G  A    +E T +NNYYG  A+
Sbjct: 189 NSLSGIFGSHMSSLGLGSPFGGGNVAGNAPVEETVINNYYGDSAN 233