BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0120.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20105 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 188 1e-47 BMEII0475 [K] COG1802 Transcriptional regulators Bme Brucella me... 134 2e-31 AGl3568 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 134 2e-31 BH1062 [K] COG1802 Transcriptional regulators Bha Bacillus halod... 124 2e-28 SMa0065 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 121 2e-27 >SMb20105 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 210 Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 96/210 (45%), Positives = 144/210 (68%), Gaps = 3/210 (1%) Query: 43 FEHLRELIIGMRLAPATVLQRAELAAQYGLSQTPIRDALIKLGEEGLVDIFPQHATVVSA 102 E+LRE I+ + LAP T L R EL Q+GLSQTP+RDAL++L EEGLV ++PQ+AT+VS Sbjct: 1 MEYLRERILALDLAPGTALSRVELQKQFGLSQTPVRDALMRLEEEGLVTVYPQYATLVSK 60 Query: 103 VNVTLARQAHFLRRSIELEIVHTLAVQVD-AALVNRLRDSIEVQRVLAGRENYAEFVLAD 161 +++ LARQ H +RR++E E V LA + + + +RLR + + LA +E +AEF+ AD Sbjct: 61 IDINLARQTHLMRRAVEQEAVFNLAEKANRGQIADRLRVANTKLKALASKE-HAEFLAAD 119 Query: 162 QAFHRQMYEAAQVPELWSMVRRQSGHLDRLRNLHVPIPGKTARVLRDHAAIVDAIAAGDP 221 +AFH ++E A + +W ++RR SGH+DRLR L++ G T RV+ H I++ I G P Sbjct: 120 RAFHFIIFEEAGLEHIWPIIRRHSGHIDRLRRLNLVNVG-TKRVVDTHDMIIEGIEKGAP 178 Query: 222 AAAQAALREHLSGTLAQLEEIRQRFPHYVK 251 A A++ HLSGTL+ +++I R+P Y++ Sbjct: 179 VEAAQAMKTHLSGTLSMIDDIAARYPDYIE 208 >BMEII0475 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 261 Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 120/208 (57%) Query: 42 VFEHLRELIIGMRLAPATVLQRAELAAQYGLSQTPIRDALIKLGEEGLVDIFPQHATVVS 101 ++ L++ II M L P T L L +YG+S+TP+R+ALI+L E+ LVD+FPQ T V+ Sbjct: 52 IYHELQQQIIRMELLPGTPLNEKALTEKYGVSRTPVREALIRLAEDRLVDVFPQSGTFVA 111 Query: 102 AVNVTLARQAHFLRRSIELEIVHTLAVQVDAALVNRLRDSIEVQRVLAGRENYAEFVLAD 161 + V +A +R+++E E A AA + +L + I +Q A ++ F D Sbjct: 112 RIPVDAIPEAVVIRQALEGETAERAAANSTAAAIEKLDELIHLQTFYARKDKPGPFHETD 171 Query: 162 QAFHRQMYEAAQVPELWSMVRRQSGHLDRLRNLHVPIPGKTARVLRDHAAIVDAIAAGDP 221 AFH + E A P +W ++ +DR R + +PI G+ +VLR+H AI DAI+A D Sbjct: 172 DAFHETIAEIAGYPGIWQHLKPVKMQIDRARRMTMPILGRMEQVLREHHAIRDAISARDV 231 Query: 222 AAAQAALREHLSGTLAQLEEIRQRFPHY 249 AA+ A++ HLS L ++E+R+ P Y Sbjct: 232 HAAREAMKHHLSAVLPDIDELRKSRPDY 259 >AGl3568 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 262 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 125/220 (56%), Gaps = 1/220 (0%) Query: 26 VITPPPLDRSRHAAPQVFEHLRELIIGMRLAPATVLQRAELAAQYGLSQTPIRDALIKLG 85 ++TP L + ++ LR+LI+ ++L P L E+AA +S+TP+R+A+I+L Sbjct: 15 LVTPDELPEGGNMTNRIHALLRKLIVEVKLLPGRALSEKEIAALLNVSKTPVREAIIRLS 74 Query: 86 EEGLVDIFPQHATVVSAVNVTLARQAHFLRRSIELEIVHTLAVQVDAALVNRLRDSIEVQ 145 EEG V + PQ T +S ++V +A F+R +E V + + RL+ + Q Sbjct: 75 EEGFVTVVPQGGTYISPIDVQRYMEACFIRFKLEEGAVIEATKRHSLEDIARLKTCLSNQ 134 Query: 146 RVLAGRENYAEFVLADQAFHRQMYEAAQVPELWSMVRRQSGHLDRLRNLH-VPIPGKTAR 204 R+ A E + F L D+ FH+ ++ AA++P WS+V + G +DR+R+L V +T + Sbjct: 135 RIAAKDEEFTNFFLLDEEFHKTIFAAARLPGAWSVVNQAKGEMDRMRHLKRVFAVRRTEK 194 Query: 205 VLRDHAAIVDAIAAGDPAAAQAALREHLSGTLAQLEEIRQ 244 V+ +H AIVD I +GD AA+ A++ HL ++ E+ + Sbjct: 195 VIEEHEAIVDGIESGDVEAAREAVQRHLGSLETKIAELSK 234 >BH1062 [K] COG1802 Transcriptional regulators Bha Bacillus halodurans Length = 226 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 113/208 (54%) Query: 42 VFEHLRELIIGMRLAPATVLQRAELAAQYGLSQTPIRDALIKLGEEGLVDIFPQHATVVS 101 V++ ++E II + L P T + E+A + +S+TP+R+A KL +E L+ I PQ T+VS Sbjct: 16 VYQRIKEQIINLELTPGTKISEQEMAGKLEVSRTPVREAFFKLAQEDLLVIIPQSGTIVS 75 Query: 102 AVNVTLARQAHFLRRSIELEIVHTLAVQVDAALVNRLRDSIEVQRVLAGRENYAEFVLAD 161 +++ L + FLR IE IV + + + + R+ ++ +Q + + D Sbjct: 76 KIDLDLVEEGRFLREHIEKAIVREVCKKANQDQLLRIETNLTMQEFCLKKGTHQRLFELD 135 Query: 162 QAFHRQMYEAAQVPELWSMVRRQSGHLDRLRNLHVPIPGKTARVLRDHAAIVDAIAAGDP 221 + FH +++ Q W ++R+ + HLDRLR L + I V+ H I +AI++ + Sbjct: 136 EEFHELLFDICQKKRTWKIIRQMNSHLDRLRILRLAINQDWTIVVEHHQKIFEAISSRNE 195 Query: 222 AAAQAALREHLSGTLAQLEEIRQRFPHY 249 A+ + H+S + + +++R+R+P + Sbjct: 196 ELAEETMATHMSLVIVEKDQLRERYPEF 223 >SMa0065 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 230 Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 111/204 (54%), Gaps = 2/204 (0%) Query: 39 APQVFEHLRELIIGMRLAPATVLQRAELAAQYGLSQTPIRDALIKLGEEGLVDIFPQHAT 98 PQV+ LRE II L P + AE+A +S+ P+R+A IKL EEGLV + PQ T Sbjct: 17 GPQVYRILREQIIQAELVPGARISEAEIARSLSISRQPVREAFIKLAEEGLVQVLPQRGT 76 Query: 99 VVSAVNVTLARQAHFLRRSIELEIVHTLAVQVDAALVNRLRDSIEVQRVLAGRENYAEFV 158 V+ ++ F+R +IE +IV +A + AA+V+ LR+ I Q+ + ++ A F+ Sbjct: 77 YVTRISTASVMDVRFVREAIEADIVRQVAGEHPAAIVDELREQIARQKQVP-HDDRAAFL 135 Query: 159 LADQAFHRQMYEAAQVPELWSMVRRQSGHLDRLRNLHVPIPGKTARVLRDHAAIVDAIAA 218 D+ FH + AA WS++ +DR+R L V + R++ H IVDAIAA Sbjct: 136 RLDELFHHTLATAAGRAHAWSVIESVKAQMDRVRFLSVD-DLQIGRLIEQHERIVDAIAA 194 Query: 219 GDPAAAQAALREHLSGTLAQLEEI 242 D A+ ALR HL L L EI Sbjct: 195 RDVGGAEQALRMHLREILKSLPEI 218