BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0110.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2708 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 264 2e-70 AGl412GM [K] COG0583 Transcriptional regulator Atu Agrobacterium... 151 1e-36 RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 116 4e-26 ygiP [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 112 8e-25 ZygiP [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 112 8e-25 >RSc2708 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 374 Score = 264 bits (674), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 134/243 (55%), Positives = 178/243 (73%), Gaps = 8/243 (3%) Query: 1 MLQLDDMQLLRALGSSASLAGAARLLDLTPPAVTVRLQRIEDRIGVRLANRAARGFALTD 60 M+ LDD+++ RALG S SLA AARLLD+TPPA+TVR++R+E R+GV L R RG + T+ Sbjct: 4 MVDLDDLRMFRALGVSRSLAAAARLLDVTPPALTVRMRRLEARLGVSLVVREPRGVSFTE 63 Query: 61 EGQRLVQEATDILERIEAITASVSRESDRGEHASLANVSGSLRVVAPFGFGRRYVAPLLR 120 EGQRL++EAT +L+R+E++ VS ++ A VSG LR+VAPFGFGRRY+AP++R Sbjct: 64 EGQRLLREATALLDRLESLPQQVSGQA--------AGVSGHLRIVAPFGFGRRYIAPIVR 115 Query: 121 DLHRNHPRLAISLLLAESPLAAASGADAIISIGRVKGSSWVGHFLAPNERFLCASPALAR 180 DLHR+ P+LAI L L+++PLA SGAD +I IG + SSWVGH LAPNER LCASPA Sbjct: 116 DLHRDAPKLAIMLHLSDNPLAEMSGADIVIHIGEARDSSWVGHPLAPNERVLCASPACLA 175 Query: 181 RMNRARHPSELADYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTI 240 + HP+ELA P L LREND+D++R RFT + R + + V+++GALSSNDGT+ Sbjct: 176 GLPPITHPAELAHLPCLCLRENDEDVTRWRFTDTTADSGRARQVVNVRVSGALSSNDGTV 235 Query: 241 TRD 243 D Sbjct: 236 ISD 238 >AGl412GM [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 304 Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 136/244 (55%), Gaps = 15/244 (6%) Query: 1 MLQLDDMQLLRALGSSASLAGAARLLDLTPPAVTVRLQRIEDRIGVRLANRAARGFALTD 60 M+ D++ R + ++ SLA AAR LD+TP AVT RLQ++E R+GVRL R +R LT+ Sbjct: 1 MITSQDLEFFRIVSTAQSLAAAARALDVTPSAVTQRLQQLEQRLGVRLLERTSRRLHLTE 60 Query: 61 EGQRLVQEATDILERIEAITASVSRESDRGEHASLANVSGSLRVVAPFGFGRRYVAPLLR 120 EGQ L Q +IL +E +T + V+G L+V APFGFGR Y+AP + Sbjct: 61 EGQLLAQRGVEILTNMEEMTEQLLERRQ--------VVTGHLQVAAPFGFGRLYIAPAMA 112 Query: 121 DLHRNHPRLAISLLLAESPLAAASGA-DAIISIGRVKGSSWVGHFLAPNERFLCASPALA 179 L HP + ++L L E P++ S A + +I +G + SS + H LAPN R LCA+P+ Sbjct: 113 QLREQHPEVKLTLSLFEDPVSLRSDAWNVLIHVGPLTDSSLIVHRLAPNRRILCAAPSYL 172 Query: 180 RRMNRARHPSELADYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGT 239 R P L + +RE+ D++ RF+ + LT+++ A+SSNDG Sbjct: 173 ERHGVPDRPETLNQHACAVIREDHADVTLWRFS------HQEKPPLTLRIQPAMSSNDGE 226 Query: 240 ITRD 243 + + Sbjct: 227 VIKQ 230 >RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 12/239 (5%) Query: 3 QLDDMQLLRALGSSASLAGAARLLDLTPPAVTVRLQRIEDRIGVRLANRAARGFALTDEG 62 Q ++ AL ++ SL+ AAR L +T PAV+ RL ++E RIG+ L R R +LT EG Sbjct: 7 QPAELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEG 66 Query: 63 QRLVQEATDILERIEAITASVSRESDRGEHASLANVSGSLRVVAPFGFGRRYVAPLLRDL 122 + ++ A IL I+ + +++ R G LRV A GFGRR++AP + + Sbjct: 67 EVFLEHARRILGEIDDLDQLLTQAKGRPR--------GLLRVNATLGFGRRHIAPAISEY 118 Query: 123 HRNHPRLAISL-LLAESPLAAASGADAIISIGRVKGSSWVGHFLAPNERFLCASPALARR 181 R +P + + L L A+ P D I G + + +APN R LCA+P RR Sbjct: 119 VRQYPGVDVQLQLTADPPPLNEDAFDVCIRFGEPPDARIIARKVAPNRRLLCAAPDYLRR 178 Query: 182 MNRARHPSELADYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTI 240 P++LA + + +R+ D R T RRT TV + G L++NDG I Sbjct: 179 HGTPLAPADLARHNCIGIRQGSDAYGVWRLTSGKGTKRRTE---TVHVRGNLTTNDGEI 234 >ygiP [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 310 Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 117/237 (49%), Gaps = 16/237 (6%) Query: 6 DMQLLRALGSSASLAGAARLLDLTPPAVTVRLQRIEDRIGVRLANRAARGFALTDEGQRL 65 D+Q+L + S S + AA L TP VT R+Q +E+ + L NR+ARG ALT+ GQR Sbjct: 10 DLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRC 69 Query: 66 VQEATDILERIEAITASVSRESDRGEHASLANVSGSLRVVAPFGFGRRYVAPLLRDLHRN 125 + A +IL + + + V++ R E G +R+ FGFGR ++AP + +L RN Sbjct: 70 YEHALEILTQYQRLVDDVTQIKTRPE--------GMIRIGCSFGFGRSHIAPAITELMRN 121 Query: 126 HPRLAISLLLAESPL-AAASGADAIISIGRVKGSSWVGHFLAPNERFLCASPALARRMNR 184 +P L + L + + D I I ++ H L N+R LCA+P ++ + Sbjct: 122 YPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQ 181 Query: 185 ARHPSELADYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTIT 241 + EL+ + L +E D + G K +VK++G LSSN G I Sbjct: 182 PQSLQELSRHDCLVTKERDMTHG------IWELGNGQEKK-SVKVSGHLSSNSGEIV 231 >ZygiP [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 310 Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 117/237 (49%), Gaps = 16/237 (6%) Query: 6 DMQLLRALGSSASLAGAARLLDLTPPAVTVRLQRIEDRIGVRLANRAARGFALTDEGQRL 65 D+Q+L + S S + AA L TP VT R+Q +E+ + L NR+ARG ALT+ GQR Sbjct: 10 DLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRC 69 Query: 66 VQEATDILERIEAITASVSRESDRGEHASLANVSGSLRVVAPFGFGRRYVAPLLRDLHRN 125 + A +IL + + + V++ R E G +R+ FGFGR ++AP + +L RN Sbjct: 70 YEHALEILTQYQRLVDDVTQIKTRPE--------GMIRIGCSFGFGRSHIAPAITELMRN 121 Query: 126 HPRLAISLLLAESPL-AAASGADAIISIGRVKGSSWVGHFLAPNERFLCASPALARRMNR 184 +P L + L + + D I I ++ H L N+R LCA+P ++ + Sbjct: 122 YPELQVYFELFDRQIDLVQDNXDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQ 181 Query: 185 ARHPSELADYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTIT 241 + EL+ + L +E D + G K +VK++G LSSN G I Sbjct: 182 PQSLQELSRHDCLVTKERDMTHG------IWELGNGQEKK-SVKVSGHLSSNSGEIV 231