BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0090.p (478 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aer... 80 8e-15 ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli... 76 2e-13 ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia co... 76 2e-13 fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 68 4e-11 RSp0383 [N] COG1345 Flagellar capping protein Rso Ralstonia sola... 64 6e-10 >PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aeruginosa Length = 474 Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 122/242 (50%), Gaps = 31/242 (12%) Query: 8 ISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTL 67 IS G D LVN+++++E ++ L E + T ++A G K+A +++Q+AL L Sbjct: 4 ISIGVGSTDYTDLVNKMVNLEGAAKTNQLATLEKTTTTRLTALGQFKSAISAFQTALTAL 63 Query: 68 TA-ASFSAQKTTLSN-----AGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQTF 121 + A F A+ SN A + + N+ ++ +A LQ+ A F Sbjct: 64 NSNAVFMARTAKSSNEDILKASATQSAVAGTYQIQVNSLATSSKIA--LQAIADPANAKF 121 Query: 122 NAGDSVAIKVG-TNQPTFITLQANATLAGVRDAINAA--KAGVTASITTDGSGDHLVLES 178 N+G ++ I VG T P +N TLAG+RDAIN A +AGV+A+I TD SG LVL S Sbjct: 122 NSG-TLNISVGDTKLPAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSGSRLVLSS 180 Query: 179 -NTGDTANTIRITA-------NNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIA 230 TGD + I++ N SLS LA+DP++ AP+ + AAAG A Sbjct: 181 TKTGDGKD-IKVEVSDDGSGGNTSLSQLAFDPAT----------APKLSDGAAAGYVTKA 229 Query: 231 VN 232 N Sbjct: 230 AN 231 >ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 465 Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 153/286 (53%), Gaps = 36/286 (12%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTLTAAS-FS 73 LD++++++ L + + K+ LTP+ N++SSF +SAYG+LK+A T++Q+A L+ A FS Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFS 71 Query: 74 A-QKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQ----KLQSAGFTAGQTFNAGDS-V 127 A TT +A T N +T S LAQ ++ DS + Sbjct: 72 ATSSTTAFSATTAGNAIAGKYTI------SVTHLAQAQTLTTRTTRDDTKTAIATSDSKL 125 Query: 128 AIKVGTNQ-PTFITLQ-ANATLAGVRDAINAAKAGVTASITTDGSGDHL--VLESNTG-D 182 I+ G ++ P I + AN++L+G+RDAIN AKAGV+ASI G+GD+ V ++TG D Sbjct: 126 TIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLD 185 Query: 183 TANTIRITANNSLSS-LAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKVS 241 A T+ ++ +++L S + YD S+ SS ++ AA + VN + A++ S Sbjct: 186 NAMTLSVSGDDALQSFMGYDASA--SSNGMEV-------SVAAQNAQLTVNNV--AIENS 234 Query: 242 SAGIAPGSTFDNGVL---AIKTGNGSTAIIQPKTNSLAGVRDAINA 284 S I+ +N L + TGN + I Q + + ++D +NA Sbjct: 235 SNTISDA--LENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNA 278 >ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia coli O157:H7 Length = 465 Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 153/286 (53%), Gaps = 36/286 (12%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTLTAAS-FS 73 LD++++++ L + + K+ LTP+ N++SSF +SAYG+LK+A T++Q+A L+ A FS Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFS 71 Query: 74 A-QKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQ----KLQSAGFTAGQTFNAGDS-V 127 A TT +A T N +T S LAQ ++ DS + Sbjct: 72 ATSSTTAFSATTAGNAIAGKYTI------SVTHLAQAQTLTTRTTRDDTKTAIATSDSKL 125 Query: 128 AIKVGTNQ-PTFITLQ-ANATLAGVRDAINAAKAGVTASITTDGSGDHL--VLESNTG-D 182 I+ G ++ P I + AN++L+G+RDAIN AKAGV+ASI G+GD+ V ++TG D Sbjct: 126 TIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLD 185 Query: 183 TANTIRITANNSLSS-LAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKVS 241 A T+ ++ +++L S + YD S+ SS ++ AA + VN + A++ S Sbjct: 186 NAMTLSVSGDDALQSFMGYDASA--SSNGMEV-------SVAAQNAQLTVNNV--AIENS 234 Query: 242 SAGIAPGSTFDNGVL---AIKTGNGSTAIIQPKTNSLAGVRDAINA 284 S I+ +N L + TGN + I Q + + ++D +NA Sbjct: 235 SNTISDA--LENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNA 278 >fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 Length = 468 Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 152/283 (53%), Gaps = 27/283 (9%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTLTAASFSA 74 LD++++++ L + + K+ LTP+ N++SSF +SAYG+LK+A T++Q+A L+ A + Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFS 71 Query: 75 QKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQTFNA---GDS-VAIK 130 +T S+ + T A T T + + + T T A DS + I+ Sbjct: 72 ATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQ 131 Query: 131 VGTNQ-PTFITLQ-ANATLAGVRDAINAAKAGVTASITTDGSGDHL--VLESNTG-DTAN 185 G ++ P I + AN++L+G+RDAIN AKAGV+ASI G+G++ V ++TG D A Sbjct: 132 QGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAM 191 Query: 186 TIRITANNSLSS-LAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKVSSAG 244 T+ ++ +++L S + YD S+ SS ++ AA + VN + A++ SS Sbjct: 192 TLSVSGDDALQSFMGYDASA--SSNGMEV-------SVAAQNAQLTVNNV--AIENSSNT 240 Query: 245 IAPGSTFDNGVL---AIKTGNGSTAIIQPKTNSLAGVRDAINA 284 I+ +N L + TGN + I Q + + ++D +NA Sbjct: 241 ISDA--LENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNA 281 >RSp0383 [N] COG1345 Flagellar capping protein Rso Ralstonia solanacearum Length = 685 Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 123/221 (55%), Gaps = 35/221 (15%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKT------LT 68 +DV+TLV +L+SVES+ LT L++ ++S+ +SA G+LK++ +++QSAL + T Sbjct: 28 IDVSTLVTKLMSVESQ-PLTLLQSTQTSYQAQLSAVGTLKSSLSTFQSALSSLTSLSGFT 86 Query: 69 AASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQTFNAGDSVA 128 + S T++ +A ++ + + + ++VLA + Q++ TA A +++ Sbjct: 87 SMKASGYDTSILSASVTSSAPSGTYAVNVTQLAQSQVLAAQGQTS-TTAAIGSGASTTIS 145 Query: 129 IKVGT-----------NQPTF----------ITL-QANATLAGVRDAINAAKAGVTASIT 166 + GT TF IT+ +N TLAG+RDAIN+A GV+ASI Sbjct: 146 FQFGTVSGGTLSNGKYTGATFTQNGNLTGGSITINSSNNTLAGIRDAINSANLGVSASIV 205 Query: 167 TDGSG--DHLVLESNTGDTANTIRI--TANNSLSS-LAYDP 202 DGS + LVL S G +++ ++I + +++L+S L+ DP Sbjct: 206 NDGSSTPNRLVLTSTAGGSSSEMKISVSGDSTLASLLSNDP 246