BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0089.p         (175 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aer...    74   2e-13
fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12    62   8e-10
ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli...    62   8e-10
ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia co...    62   8e-10

>PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aeruginosa
          Length = 474

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 1/154 (0%)

Query: 22  LASESSVLALMGQVRNTMLGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDG 81
           L  ++SV AL+  +R+ ++ +  +    NL+ +GI+  KDGTL +D  KL  A + DF+G
Sbjct: 318 LLGDASVRALVNTMRSELIASNENGSVRNLAALGITTTKDGTLEIDEKKLDKAISADFEG 377

Query: 82  ITQLFTSATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKD 141
           +   FT  T G+  +L   M       G+L  +T  LQ +L  V  Q+     RL  L++
Sbjct: 378 VASYFTGDT-GLAKRLGDKMKPYTDAQGILDQRTTTLQKTLSNVDTQKADLAKRLAALQE 436

Query: 142 TYTNQFNRLNVTLATMQSRQSYLTQQLAKLSKSS 175
             T QFN L+     M  RQ  +T  LA L   S
Sbjct: 437 KLTTQFNLLSAMQDEMTKRQKSITDNLASLPYGS 470


>fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12
          Length = 468

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 15  QASTGSPLASESSVLALMGQVRNTMLGALGDNGATNLSQIGISFQ-KDGTLALDATKLTN 73
           Q+S+   L  +S++  +  Q+++ +   +  +    L+QIGI+    DG L LDA KLT 
Sbjct: 305 QSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTA 364

Query: 74  AANKDFDGITQLFTS--ATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTA 131
           A  KD  G+  L        G+   +   +   L  +G++ + T G+  +L  +T    A
Sbjct: 365 ALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNA 424

Query: 132 ANARLQDLKDTYTNQFNRLNVTLATMQSRQSYLTQQLAKLSKS 174
           A+ R+      Y  QF +L+V + ++ S  SYLTQQ    S S
Sbjct: 425 ASDRIDAQVARYKEQFTQLDVLMTSLNSTSSYLTQQFENNSNS 467


>ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli O157:H7
           EDL933
          Length = 465

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 15  QASTGSPLASESSVLALMGQVRNTMLGALGDNGATNLSQIGISFQ-KDGTLALDATKLTN 73
           Q+S+   L  +S++  +  Q+++ +   +  +    L+QIGI+    DG L LDA KLT 
Sbjct: 302 QSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTA 361

Query: 74  AANKDFDGITQLFTS--ATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTA 131
           A  KD  G+  L        G+   +   +   L  +G++ + T G+  +L  +T    A
Sbjct: 362 ALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNA 421

Query: 132 ANARLQDLKDTYTNQFNRLNVTLATMQSRQSYLTQQLAKLSKS 174
           A+ R+      Y  QF +L+V + ++ S  SYLTQQ    S S
Sbjct: 422 ASDRIDAQVARYKEQFTQLDVLMTSLNSTSSYLTQQFENNSNS 464


>ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia coli O157:H7
          Length = 465

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 15  QASTGSPLASESSVLALMGQVRNTMLGALGDNGATNLSQIGISFQ-KDGTLALDATKLTN 73
           Q+S+   L  +S++  +  Q+++ +   +  +    L+QIGI+    DG L LDA KLT 
Sbjct: 302 QSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTA 361

Query: 74  AANKDFDGITQLFTS--ATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTA 131
           A  KD  G+  L        G+   +   +   L  +G++ + T G+  +L  +T    A
Sbjct: 362 ALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNA 421

Query: 132 ANARLQDLKDTYTNQFNRLNVTLATMQSRQSYLTQQLAKLSKS 174
           A+ R+      Y  QF +L+V + ++ S  SYLTQQ    S S
Sbjct: 422 ASDRIDAQVARYKEQFTQLDVLMTSLNSTSSYLTQQFENNSNS 464