BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0041.p (300 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1731 [E] COG1177 ABC-type spermidine/putrescine transport sys... 365 e-101 PA0606 [E] COG1177 ABC-type spermidine/putrescine transport syst... 320 3e-87 YPO2841 [E] COG1177 ABC-type spermidine/putrescine transport sys... 283 3e-76 BMEII0920 [E] COG1177 ABC-type spermidine/putrescine transport s... 211 2e-54 SMa1751 [E] COG1177 ABC-type spermidine/putrescine transport sys... 208 9e-54 >RSc1731 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Rso Ralstonia solanacearum Length = 272 Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/270 (76%), Positives = 243/270 (90%) Query: 29 LFPPYTSLVERAWFFASRGFNLLVLLFLVSPILVMIPLSFSDSSFLMYPIKSFSLRWYEN 88 +F P+TSL+ER W+FA RG +L LL+LV P+LV++PLSFS S+FL YPI S+SLRWY+N Sbjct: 1 MFAPHTSLIERIWYFALRGLAVLTLLYLVLPVLVIVPLSFSSSTFLAYPIPSYSLRWYQN 60 Query: 89 LFSSDDWVRAAQNSFIVAPAATVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVV 148 L SS++W AA+NSFIVAPAAT++ATV GTLAA+GLNKA+FRGK +LMAIL+SPMIVPVV Sbjct: 61 LVSSEEWRMAAKNSFIVAPAATLVATVFGTLAAIGLNKAEFRGKALLMAILVSPMIVPVV 120 Query: 149 VVGVGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASP 208 VVGVG+YLFFA +GL+++Y GLILAHAALG PFVVTTVLATLQGFNHNLVRASLSLGA+P Sbjct: 121 VVGVGMYLFFAPLGLANTYTGLILAHAALGVPFVVTTVLATLQGFNHNLVRASLSLGANP 180 Query: 209 LRTFFRVTLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISPT 268 + TFFR+TLPVIAPG+ISGALFAFATSFDEVV+TLF+AG +Q TLPRQMF GI++NISPT Sbjct: 181 VMTFFRITLPVIAPGVISGALFAFATSFDEVVVTLFLAGADQVTLPRQMFTGIRENISPT 240 Query: 269 IAALATILIIFSTCLLLALEWLRGRNKAAA 298 IAALATILI+FSTCLLL EWLRGR A A Sbjct: 241 IAALATILIVFSTCLLLTFEWLRGRAAAKA 270 >PA0606 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Pae Pseudomonas aeruginosa Length = 276 Score = 320 bits (819), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 178/264 (67%), Positives = 222/264 (84%) Query: 32 PYTSLVERAWFFASRGFNLLVLLFLVSPILVMIPLSFSDSSFLMYPIKSFSLRWYENLFS 91 PY S VER WF++ R LVLLFLV P+LV++PLSF+ +FL+YP++ FSLRWY + F Sbjct: 4 PYMSPVERLWFYSLRILCGLVLLFLVLPVLVIVPLSFNSGTFLVYPLQGFSLRWYADFFQ 63 Query: 92 SDDWVRAAQNSFIVAPAATVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVG 151 S +W+R+ NS IVAPAAT++A V GTLAA+GL + +FRGK ++M+++ISPM+VPVV++G Sbjct: 64 SAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIG 123 Query: 152 VGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRT 211 V YLFFA +GL +SYL LI+ HA LG PFV+ TV ATLQGFN+NLVRA+ SLGA PL T Sbjct: 124 VASYLFFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTT 183 Query: 212 FFRVTLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISPTIAA 271 FFRVTLP+IAPG+ISGALFAFATSFDEVV+TLF+AGPEQATLPRQMF+GI++N+SPTIAA Sbjct: 184 FFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAA 243 Query: 272 LATILIIFSTCLLLALEWLRGRNK 295 AT+LI FS LLL LEWLRGR++ Sbjct: 244 AATLLIGFSVLLLLTLEWLRGRSE 267 >YPO2841 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Ype Yersinia pestis Length = 282 Score = 283 bits (724), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 138/239 (57%), Positives = 187/239 (78%) Query: 39 RAWFFASRGFNLLVLLFLVSPILVMIPLSFSDSSFLMYPIKSFSLRWYENLFSSDDWVRA 98 R W + ++ +LLFL+ P+LV++PLSF+ SFL YP+ FSLRWY+ F+SD+W+ A Sbjct: 17 RGWKWVFNFYSAAILLFLIVPVLVIVPLSFNAGSFLSYPMAGFSLRWYQTFFNSDEWLGA 76 Query: 99 AQNSFIVAPAATVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVGVGVYLFF 158 NS ++AP AT++AT LG LAA+GL + +FRGK ++MA+LISPM+ PVV++ VG++ FF Sbjct: 77 LGNSLLIAPLATLLATGLGVLAAIGLVRGEFRGKALVMAMLISPMVAPVVIIAVGMFFFF 136 Query: 159 ARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRVTLP 218 AR+ L +SYLGL+LAHA LG PFVV TV A L+ ++ NL RA+ SLGAS R F +VTLP Sbjct: 137 ARLSLLNSYLGLVLAHALLGVPFVVITVTAVLKSYDQNLSRAAASLGASQWRVFRKVTLP 196 Query: 219 VIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISPTIAALATILI 277 +IAPG+ SGALFAFA SFDEVV+TLF+A P Q TLP +MFAGI++N+ PTIAA A++++ Sbjct: 197 LIAPGVFSGALFAFAVSFDEVVVTLFLASPRQRTLPIKMFAGIRENLDPTIAAAASLMV 255 >BMEII0920 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Bme Brucella melitensis Length = 258 Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 114/246 (46%), Positives = 164/246 (66%) Query: 48 FNLLVLLFLVSPILVMIPLSFSDSSFLMYPIKSFSLRWYENLFSSDDWVRAAQNSFIVAP 107 F + ++FLV+P+ ++PL+F+ S FL YP+ +S+RW+E L +++ W RA NS I+ Sbjct: 9 FGVAAVVFLVAPLFAILPLAFTSSVFLTYPVPGWSVRWFEELTTAEVWRRAIVNSLIIGF 68 Query: 108 AATVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVGVGVYLFFARIGLSDSY 167 +ATVLGT+AA+GL G + + + PM+VP VV+GVG+ LFF R+ +++SY Sbjct: 69 GTMALATVLGTMAALGLRTRGLFLSGPIRTLFLLPMVVPAVVLGVGMQLFFVRLDIANSY 128 Query: 168 LGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRVTLPVIAPGLISG 227 G+I+AH + PFV+ +V L G + L A+ SLGA+PL F ++TLP+ PG+ SG Sbjct: 129 FGVIVAHTVVSIPFVLVSVSGALAGIDRRLELAAESLGAAPLTVFRKITLPLAMPGIASG 188 Query: 228 ALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISPTIAALATILIIFSTCLLLAL 287 + AFATS DEVVLTLFVAGP Q TL RQMF+ I++NISP IAA A + I + + LA Sbjct: 189 GVLAFATSLDEVVLTLFVAGPNQRTLARQMFSTIRENISPAIAAAAFLFISGTVLIGLAA 248 Query: 288 EWLRGR 293 +GR Sbjct: 249 VLFKGR 254 >SMa1751 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Sme Sinorhizobium meliloti Length = 260 Score = 208 bits (530), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 113/224 (50%), Positives = 156/224 (69%) Query: 44 ASRGFNLLVLLFLVSPILVMIPLSFSDSSFLMYPIKSFSLRWYENLFSSDDWVRAAQNSF 103 A F L +LFLV+P++ ++PL+F+ S L YPI S+SLRW+E LF++D W RA NS Sbjct: 6 AKFAFASLTILFLVAPLIAILPLAFTSSVILTYPIPSWSLRWFEELFTADAWRRAIFNSL 65 Query: 104 IVAPAATVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVGVGVYLFFARIGL 163 I+ T++AT+LGT A++GL +G + + + PM+VP VV+GVG+ + A GL Sbjct: 66 IIGTGTTLLATILGTAASLGLRNRLIFFRGSMRTLFLLPMVVPAVVLGVGMQVLLAGFGL 125 Query: 164 SDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRVTLPVIAPG 223 ++SY G+I+AH + PFVV +V+ L G + + A+ SLGASP F RVTLP+ PG Sbjct: 126 TNSYAGVIIAHTVVAVPFVVVSVIGALDGIDERVELAAQSLGASPATVFHRVTLPLALPG 185 Query: 224 LISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISP 267 ++SGA+ AFATS DEVVLTLFVAGP Q TL RQMF+ I++NISP Sbjct: 186 VLSGAVLAFATSLDEVVLTLFVAGPNQRTLARQMFSSIRENISP 229