BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0034.p (422 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20625 [G] COG2814 Arabinose efflux permease Sme Sinorhizobium... 404 e-112 mll3374 Non COG 399 e-111 mll6183 Non COG 397 e-110 AGl2058 [G] COG2814 Arabinose efflux permease Atu Agrobacterium ... 254 3e-67 yicM [G] COG2814 Arabinose efflux permease Eco Escherichia coli K12 242 2e-63 >SMb20625 [G] COG2814 Arabinose efflux permease Sme Sinorhizobium meliloti Length = 401 Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust. Identities = 214/370 (57%), Positives = 267/370 (72%) Query: 27 KAGQEVPANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAIVGA 86 ++ + + W+G+ SLALGVF LVTAEFLP S+LT +A DL +S G AGQAVTATA VGA Sbjct: 15 ESEERIDPAWAGVGSLALGVFGLVTAEFLPVSILTPMAADLGISTGTAGQAVTATASVGA 74 Query: 87 VAAPSIPLLTRNIDRKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSMA 146 VA +I + TR DR+ V+ +L L+ S++LA A NL +LL ARV+LG+ LGGFWSM Sbjct: 75 VAGLTIAIATRRFDRRLVLWGFTLALIASSLLAAFATNLAMLLAARVVLGIGLGGFWSMM 134 Query: 147 AALAMRLVPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFVAAGVVSLVAIA 206 AA+A+RLVP L RAMS++ TGVSVATVCAAPIGAY+G+LWGWR+AF+ A V V + Sbjct: 135 AAIALRLVPMSLVPRAMSIVFTGVSVATVCAAPIGAYIGDLWGWRAAFLMAAAVGAVTLI 194 Query: 207 IQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALLAVLLVVSGHFAGFTYIRPLMEQITHM 266 +Q IPRLPP+ PSLK+L +L+ +R+ ++ VLL VSGHFAGFTY+RP +E + Sbjct: 195 VQMATIPRLPPQSAPSLKLLFDLMRMPSIRIGIITVLLFVSGHFAGFTYVRPFLENVPEF 254 Query: 267 SVATISAVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGALIALLAASLWVAGSSPVVAA 326 + IS +LL YG GGFFGN AGG I ERS A+ G LIA +A +L GS VV+A Sbjct: 255 GIEAISLILLAYGTGGFFGNLAGGLIIERSITAAVSIGTLLIAAMAFALVTFGSFDVVSA 314 Query: 327 VAITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGGLLVAAFQVAIASGAIGGGVLVDHVGA 386 VA+TLWGFAFGA PV QTW+VRAAPDHAE GGL+VA FQV IASGA+ GG+ VD G Sbjct: 315 VAVTLWGFAFGALPVAVQTWMVRAAPDHAESTGGLIVATFQVGIASGAVLGGLFVDSFGP 374 Query: 387 LGGPIFAVVA 396 LG + VA Sbjct: 375 LGAITYCAVA 384 >mll3374 Non COG Length = 404 Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust. Identities = 232/412 (56%), Positives = 301/412 (73%), Gaps = 13/412 (3%) Query: 1 MSTP--GIIEAPLTETAAPATAPAPTAHKAGQEVPANWSGIASLALGVFSLVTAEFLPAS 58 M+ P G+I+A L PA T + PA W + SLALGVF LVTAEFLPAS Sbjct: 1 MAEPATGVIDARLLN-------PADTDERTE---PA-WGAVVSLALGVFGLVTAEFLPAS 49 Query: 59 LLTAIATDLHVSDGAAGQAVTATAIVGAVAAPSIPLLTRNIDRKRVVLMLSLLLLVSNIL 118 LLT +A DL V++G AGQAVTATAIVGA+AAP++ ++TR +DR+ V+ ML+ L++SN+L Sbjct: 50 LLTPMARDLGVTEGVAGQAVTATAIVGAIAAPTMAIITRRMDRRLVMWMLTSFLILSNLL 109 Query: 119 AVTAPNLPVLLVARVLLGVALGGFWSMAAALAMRLVPDHLFARAMSLILTGVSVATVCAA 178 A A +LP+LL+ARV+LGVALGGFW+M+AA+A+RLVP L RAMS+ILTGVS+ATV AA Sbjct: 110 ATFAASLPMLLLARVVLGVALGGFWAMSAAMALRLVPMRLMPRAMSIILTGVSLATVTAA 169 Query: 179 PIGAYMGNLWGWRSAFVAAGVVSLVAIAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVA 238 P+GAY+G++WGWR+AF+ A +V +A+ +Q IP+LPP S L ++L R +RVA Sbjct: 170 PLGAYVGDIWGWRTAFMIATIVGALALLVQLATIPKLPPMGVASFLTLLDVLKRPSIRVA 229 Query: 239 LLAVLLVVSGHFAGFTYIRPLMEQITHMSVATISAVLLGYGVGGFFGNFAGGFIAERSER 298 LL VLLV SGHFAGFTY+RP +E++ + + TIS VLL YG+GGFFGN AGGF+AER+ + Sbjct: 230 LLVVLLVASGHFAGFTYVRPFLEKVPVLHIETISLVLLAYGIGGFFGNIAGGFLAERNLK 289 Query: 299 YAIVSGGALIALLAASLWVAGSSPVVAAVAITLWGFAFGAFPVGFQTWIVRAAPDHAEGA 358 A+ LIAL AAS+ + G SP +AA A+T WGFAFGA PVG Q+W+VRAAPD AE A Sbjct: 290 IAVALAPLLIALAAASMLIFGPSPTIAAAAVTAWGFAFGAVPVGLQSWLVRAAPDQAESA 349 Query: 359 GGLLVAAFQVAIASGAIGGGVLVDHVGALGGPIFAVVAITLGTLLTLRYGPR 410 GGL+VA FQVAIA GA+ GG+LVDH G + +A L ++ GP+ Sbjct: 350 GGLMVATFQVAIALGAVFGGLLVDHAGVASAFAYCGIATLLAAIVVFLRGPK 401 >mll6183 Non COG Length = 475 Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust. Identities = 212/386 (54%), Positives = 278/386 (72%), Gaps = 1/386 (0%) Query: 26 HKAGQEVPANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAIVG 85 + Q W + SLALG F LVTAEFLPAS+LT +A DL +++GA GQA+T TAIVG Sbjct: 84 KQPDQRSGPAWGAVISLALGTFGLVTAEFLPASVLTPLAHDLSITEGAVGQALTTTAIVG 143 Query: 86 AVAAPSIPLLTRNIDRKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSM 145 A++AP++ ++TR +DR+ V+ ++LLL++SN+L+ A +LPVLL ARV+LG+ALGGFWS+ Sbjct: 144 AISAPTMAVITRPLDRRIVIWAMTLLLILSNVLSAVAGSLPVLLAARVVLGIALGGFWSI 203 Query: 146 AAALAMRLVPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFVAAGVVSLVAI 205 +AALAMRLVP HL RAMS+ILTGV+ ATVCAAPIGAY+G++WGWR+AF+ A VV V + Sbjct: 204 SAALAMRLVPSHLLRRAMSIILTGVTCATVCAAPIGAYVGDIWGWRTAFMIAAVVGAVTL 263 Query: 206 AIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALLAVLLVVSGHFAGFTYIRPLMEQITH 265 +Q I IPRLPP S + L ++ ++VA+L VLLV SGHFAGFTYIR +E+ Sbjct: 264 VVQLITIPRLPPIGVASFRSLLDVAKNPMIKVAMLVVLLVASGHFAGFTYIRAFLEKFPA 323 Query: 266 MSVATISAVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGALIALLAASLWVAGSSPVVA 325 + + TIS VLL +G+GGFFGN AGGF+AE S + A IA+ SL G+S Sbjct: 324 LDIETISLVLLVFGIGGFFGNLAGGFLAEHSLKAAAALPPLFIAMATVSLLTLGASAWAT 383 Query: 326 AVAITLWGFAFGAFPVGFQTWIV-RAAPDHAEGAGGLLVAAFQVAIASGAIGGGVLVDHV 384 A+A+T+WGFAFGA PVG QTW+V AAP+ AE AGGL+ A FQVAIA+GAI GG+L+D+ Sbjct: 384 AIAVTVWGFAFGAVPVGLQTWMVLHAAPEQAESAGGLMAATFQVAIAAGAIFGGLLMDNA 443 Query: 385 GALGGPIFAVVAITLGTLLTLRYGPR 410 G ++ VA LG L GP+ Sbjct: 444 GVASSLAYSAVASFLGALTVFLLGPK 469 >AGl2058 [G] COG2814 Arabinose efflux permease Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 254 bits (648), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 158/355 (44%), Positives = 222/355 (62%), Gaps = 4/355 (1%) Query: 34 ANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAIVGAVAAPSIP 93 A W + S+A F+LV+AEFLPA LLT +A DL +++G AGQ VTATA VGAV A Sbjct: 26 ATWFAVLSMAATSFALVSAEFLPAGLLTPMARDLGITEGTAGQVVTATASVGAVTALFSN 85 Query: 94 LLTRNIDRKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSMAAALAMRL 153 +L ++RK V++ LS L + SNILA A + +LLV R LG+AL GFW+++ A+ RL Sbjct: 86 VLIGKLNRKTVLVGLSALAIGSNILASFATDFWLLLVGRAGLGIALSGFWALSVAVVARL 145 Query: 154 VPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFVAAGVVSLVAIAIQWIAIP 213 V + R M+++ GVS+AT+ A +GA + + GWR A ++ +A+ +Q +++P Sbjct: 146 VGANATGRGMAIVTLGVSLATIAAPSMGALISDWLGWRVAMSMTAGLAAIAMLLQILSLP 205 Query: 214 RLPPKDHPSLKVLAELLGRKDVRVALLAVLLVVSGHFAGFTYIRPLMEQITHMSVATISA 273 LP SL + L R V++ +LA+LL+++GHFAG Y+RP +EQ+TH+ I+ Sbjct: 206 TLPASTSNSLADVFRLTRRPSVQLGMLAILLLMTGHFAGSVYVRPFLEQVTHLDTTPIAL 265 Query: 274 VLLGYGVGGFFGNFAGGFIAERSERYAIVSGGALI--ALLAASLWVAGSSPVVAAVAITL 331 LLG+GV GN AGG +A+ S R A+ AL+ A L W A +S A VA L Sbjct: 266 ALLGFGVASVLGNVAGGRMADNSIRLALAVTAALMGFATLFLVFWGAHTSAAFALVA--L 323 Query: 332 WGFAFGAFPVGFQTWIVRAAPDHAEGAGGLLVAAFQVAIASGAIGGGVLVDHVGA 386 WGFAFG PV T + R APD E AG L+V +FQVAI+ GA+ GG +VD+ GA Sbjct: 324 WGFAFGMAPVVLPTNLSRGAPDALEAAGSLMVVSFQVAISIGAVFGGYIVDYYGA 378 >yicM [G] COG2814 Arabinose efflux permease Eco Escherichia coli K12 Length = 451 Score = 242 bits (617), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/353 (40%), Positives = 208/353 (58%), Gaps = 4/353 (1%) Query: 35 NWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAIVGAVAAPSIPL 94 NWS + S+A V L+ EFLP SLLT +A DL +S+G AGQ+VT TA V A+ I Sbjct: 73 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQ 132 Query: 95 LTRNIDRKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSMAAALAMRLV 154 + DR+ VV++ ++LL +S +L A + +LL+ R LG+ALGGFW+M+A+L MRLV Sbjct: 133 TIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLV 192 Query: 155 PDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFVAAGVVSLVAIAIQWI--AI 212 P +A+S+I VS+A V AAP+G+++G L GWR+ F AA V+ + + I WI ++ Sbjct: 193 PPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGV--LCIFWIIKSL 250 Query: 213 PRLPPKDHPSLKVLAELLGRKDVRVALLAVLLVVSGHFAGFTYIRPLMEQITHMSVATIS 272 P LP + + LL R V ++A+ + +G FA FTYIRP+ + V ++ Sbjct: 251 PSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLT 310 Query: 273 AVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGALIALLAASLWVAGSSPVVAAVAITLW 332 VLL +G+ F G FI +RS + A+ ++A+ A L + GS +VA +W Sbjct: 311 LVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIW 370 Query: 333 GFAFGAFPVGFQTWIVRAAPDHAEGAGGLLVAAFQVAIASGAIGGGVLVDHVG 385 G F PVG+ TWI R+ D AE AG + VA Q+A GA GG +D++G Sbjct: 371 GLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG 423