BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0025.p         (77 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl1078 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type...   107   8e-24
YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type...    79   3e-15
BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ...    74   1e-13
STM3883 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type...    73   2e-13
rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type tr...    73   2e-13

>AGl1078 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport
           systems, permease components Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 327

 Score =  107 bits (266), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 61/64 (95%)

Query: 14  LXAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNLMGINPYLQDIIRGVIILLAIYIA 73
           + AVVLGGTAIAGGRGL++GTLIGAVLLGILNNGLNLMGINPYLQD+I+G IILLAIYI 
Sbjct: 264 IAAVVLGGTAIAGGRGLILGTLIGAVLLGILNNGLNLMGINPYLQDVIKGGIILLAIYIG 323

Query: 74  REWR 77
           REWR
Sbjct: 324 REWR 327


>YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport
           systems, permease components Ype Yersinia pestis
          Length = 330

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 55/64 (85%)

Query: 14  LXAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNLMGINPYLQDIIRGVIILLAIYIA 73
           + AVVLGG AI+GG+G ++GTL+GA++LG+LNNGLNLM ++PY+Q++++G IIL AIY++
Sbjct: 266 IAAVVLGGAAISGGKGAIIGTLVGAMMLGVLNNGLNLMSVSPYIQNVVKGGIILAAIYLS 325

Query: 74  REWR 77
              R
Sbjct: 326 SVRR 329


>BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport
           systems, permease components Bha Bacillus halodurans
          Length = 314

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 52/63 (82%)

Query: 13  GLXAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNLMGINPYLQDIIRGVIILLAIYI 72
            + AVVLGGT++ GGRG +VGTLIGA+++G+LNNGLNL+G++ + Q +++G +ILLA+ +
Sbjct: 249 AIAAVVLGGTSLTGGRGWIVGTLIGALIIGVLNNGLNLLGVSSFFQQVVKGSVILLAVLL 308

Query: 73  ARE 75
            R 
Sbjct: 309 DRR 311


>STM3883 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport
           systems, permease components Sty Salmonella typhimurium
           LT2
          Length = 321

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 52/63 (82%)

Query: 13  GLXAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNLMGINPYLQDIIRGVIILLAIYI 72
            + AVVLGGT++AGG+G +VGTLIGA++LG LNNGLNL+G++ Y Q I++ V+ILLA+ +
Sbjct: 257 AIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLV 316

Query: 73  ARE 75
             +
Sbjct: 317 DNK 319


>rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport
           systems, permease components Eco Escherichia coli K12
          Length = 321

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 52/63 (82%)

Query: 13  GLXAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNLMGINPYLQDIIRGVIILLAIYI 72
            + AVVLGGT++AGG+G +VGTLIGA++LG LNNGLNL+G++ Y Q I++ V+ILLA+ +
Sbjct: 257 AIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLV 316

Query: 73  ARE 75
             +
Sbjct: 317 DNK 319