BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0021.p         (83 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin2353 [E] COG1126 ABC-type polar amino acid transport system, ...   135   2e-32
CAC0378 [E] COG1126 ABC-type polar amino acid transport system, ...   130   6e-31
CAC3618 [E] COG1126 ABC-type polar amino acid transport system, ...   129   1e-30
RSc3408 [E] COG1126 ABC-type polar amino acid transport system, ...   128   3e-30
AF0680 [E] COG1126 ABC-type polar amino acid transport system, A...   127   7e-30

>lin2353 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Lin Listeria innocua
          Length = 241

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 75/83 (90%)

Query: 1   MLFDEPTSALDPELVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEE 60
           MLFDEPTSALDPE+VGEVL+VMK LA+EGMTMVVVTHEMGFAREV+DRV F+D GVI E+
Sbjct: 158 MLFDEPTSALDPEMVGEVLSVMKSLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQ 217

Query: 61  GPPQQVLGDPHHERTRDFLRKVL 83
           G P++V G+P ++RT+DFL KVL
Sbjct: 218 GTPEEVFGNPQNDRTKDFLGKVL 240


>CAC0378 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Cac Clostridium acetobutylicum
          Length = 243

 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 69/83 (83%)

Query: 1   MLFDEPTSALDPELVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEE 60
           MLFDEPTSALDPELVGEVL VMK LA EGMTMVVVTHEMGFAREVSDRV F+D G I+EE
Sbjct: 161 MLFDEPTSALDPELVGEVLNVMKDLAREGMTMVVVTHEMGFAREVSDRVIFMDGGKIVEE 220

Query: 61  GPPQQVLGDPHHERTRDFLRKVL 83
           G P+ +  +P  ERTR FL K+L
Sbjct: 221 GKPEDIFNNPKEERTRAFLNKIL 243


>CAC3618 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Cac Clostridium acetobutylicum
          Length = 243

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 72/83 (86%)

Query: 1   MLFDEPTSALDPELVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEE 60
           MLFDEPTSALDPELVGEVL+VMK+LAEEGMTMVVVTHEMGFAREV+DRV F+D G I+EE
Sbjct: 161 MLFDEPTSALDPELVGEVLSVMKELAEEGMTMVVVTHEMGFAREVADRVIFMDGGKIVEE 220

Query: 61  GPPQQVLGDPHHERTRDFLRKVL 83
             P+ +  +P  ERT++FL K+L
Sbjct: 221 NTPEGIFTNPKEERTKEFLNKIL 243


>RSc3408 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Rso Ralstonia solanacearum
          Length = 253

 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 70/83 (84%)

Query: 1   MLFDEPTSALDPELVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEE 60
           MLFDEPTSALDPELVG+VL VM+ LA EGMTM+VVTHEMGFAREV+DRV F+  G I+EE
Sbjct: 158 MLFDEPTSALDPELVGDVLEVMRALAREGMTMIVVTHEMGFAREVADRVCFLHSGTIVEE 217

Query: 61  GPPQQVLGDPHHERTRDFLRKVL 83
           GP  QVLG P   RT+DFLR+VL
Sbjct: 218 GPAAQVLGAPRQPRTQDFLRRVL 240


>AF0680 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Afu Archaeoglobus fulgidus
          Length = 242

 Score =  127 bits (319), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 69/83 (83%)

Query: 1   MLFDEPTSALDPELVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEE 60
           MLFDE TSALDPELV EVL VMKQLA +GMTMVVVTHEMGFAREV DRV F+D GVI+EE
Sbjct: 160 MLFDEVTSALDPELVKEVLDVMKQLARDGMTMVVVTHEMGFAREVGDRVIFMDGGVIVEE 219

Query: 61  GPPQQVLGDPHHERTRDFLRKVL 83
           G P+Q+  +P HERTR FL  +L
Sbjct: 220 GKPEQIFSNPKHERTRKFLSMIL 242