BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0014.p         (105 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0075 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Rso Ral...   120   1e-27
VC0044 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Vch Vibr...    96   2e-20
NMB0112 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Nme Nei...    94   8e-20
YPO0240 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Ype Yer...    94   1e-19
HI0624 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Hin Haem...    91   8e-19

>RSc0075 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Rso Ralstonia
           solanacearum
          Length = 441

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 73/115 (63%), Gaps = 13/115 (11%)

Query: 1   VPCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWPQES 60
           VPC+A+GIVRRHPDIRWLRR  D   LA L   I+  LW  L+P GKL+ VTCS++P E 
Sbjct: 325 VPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGKLVYVTCSIFPTEG 384

Query: 61  EQQAVAFAQK-HNAIRLPAPGQLLPTASETA------------DHDGLFYALFQK 102
           E QA  F  +  +AIRL APGQLLP   E A            DHDG +YA+FQK
Sbjct: 385 EAQARWFESRLQDAIRLHAPGQLLPAMPEAAGGFVPGVSSLPLDHDGFYYAVFQK 439


>VC0044 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Vch Vibrio
           cholerae
          Length = 434

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 9/107 (8%)

Query: 2   PCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWPQESE 61
           PC+A+G++RRHPDI+WLRR  D A LA L  +ILD +WQ L+P G L+  TCS+ PQE+ 
Sbjct: 329 PCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENR 388

Query: 62  QQAVAFAQKHNAIRL----PA-PG-QLLPTASETADHDGLFYALFQK 102
            Q  AF ++    RL    PA PG Q+LP        DG +YA+  K
Sbjct: 389 LQVKAFLERTPDARLVGSDPAQPGRQILPGEEAM---DGFYYAVLSK 432


>NMB0112 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Nme Neisseria
           meningitidis MC58
          Length = 419

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 4/102 (3%)

Query: 1   VPCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWPQES 60
           VPCTASG+ RR+PD++WLRR TD  + A     +LD LWQ+L+  G++L+ TCS++ +E+
Sbjct: 321 VPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQVLKSGGRMLIATCSVFVEEN 380

Query: 61  EQQAVAFAQKHNAIRLPAPGQLLPTASETADHDGLFYALFQK 102
           + Q   F  +H    L     LLP   +    DG +YAL QK
Sbjct: 381 DGQLQKFLNRHADAELIESRVLLPNKHQ----DGFYYALIQK 418


>YPO0240 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Ype Yersinia
           pestis
          Length = 429

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 10/104 (9%)

Query: 2   PCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWPQESE 61
           PC+A+G++RRHPDI+WLRR  D ++LA L ++I++ +W  L+  G L+  TCS+ P+E++
Sbjct: 324 PCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQ 383

Query: 62  QQAVAFAQKHNAIRL------PAPG-QLLPTASETADHDGLFYA 98
           QQ  AF Q+H   +L       APG Q LP      D DG FYA
Sbjct: 384 QQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYA 424


>HI0624 [J] COG0144 tRNA and rRNA cytosine-C5-methylases Hin Haemophilus
           influenzae
          Length = 451

 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 13/111 (11%)

Query: 2   PCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWPQESE 61
           PC+A+G++RRHPDI+WLR++TD AQL  L  +IL  LW+ L+P+G LL  TCS+ P+E+ 
Sbjct: 341 PCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENC 400

Query: 62  QQAVAFAQKH---NAIRLP------APG-QLLPTASETADHDGLFYALFQK 102
           +Q  AF   H     + LP      A G Q +P  +     DG +YA   K
Sbjct: 401 EQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLK 448