BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0002.p         (136 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PM2000 [I] COG0558 Phosphatidylglycerophosphate synthase Pmu Pas...   146   1e-35
PA2541 [I] COG0558 Phosphatidylglycerophosphate synthase Pae Pse...   141   4e-34
YPO2817 [I] COG0558 Phosphatidylglycerophosphate synthase Ype Ye...   129   1e-30
Z2319 [I] COG0558 Phosphatidylglycerophosphate synthase EcZ Esch...   116   1e-26
ECs2010 [I] COG0558 Phosphatidylglycerophosphate synthase Ecs Es...   116   1e-26

>PM2000 [I] COG0558 Phosphatidylglycerophosphate synthase Pmu Pasteurella
           multocida
          Length = 218

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 99/134 (73%), Gaps = 1/134 (0%)

Query: 2   ISIYQLKPRFQALLRPMVAALAGAGVTANAVTVLAMLVSLGLGALLWLEGASRPALFLLL 61
           +SIY LKP+FQ LLRP V  LA  GV+AN VT+LA  +S+ LG  L    A    LF+L+
Sbjct: 1   MSIYDLKPKFQNLLRPTVVKLAQRGVSANQVTLLACAISVVLGLFL-TALAEVHWLFILI 59

Query: 62  PLWMFLRMAFNAVDGMLAREFGQQSALGAYLNELTDVFSDAALYLPFALVAPFGWGSVGA 121
           P+W+F+RMA NA+DGMLAREF Q+S LG YLNE+TDV SDAALYLPFA + PF    +G 
Sbjct: 60  PIWLFIRMALNAIDGMLAREFHQKSRLGGYLNEITDVVSDAALYLPFACIFPFDPLLIGL 119

Query: 122 LIFLSAVSEMTGAL 135
           +I+L+A++E+ G L
Sbjct: 120 IIWLAALTELCGIL 133


>PA2541 [I] COG0558 Phosphatidylglycerophosphate synthase Pae Pseudomonas
           aeruginosa
          Length = 211

 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 100/136 (73%), Gaps = 3/136 (2%)

Query: 1   MISIYQLKPRFQALLRPMVAALAGAGVTANAVTVLAMLVSLGLGALLWLEG-ASRPALFL 59
           MIS+YQLKPRFQ LLRP V  L   G+TAN VT+ A L+SL +GAL+   G AS   LF 
Sbjct: 1   MISVYQLKPRFQNLLRPGVQRLYQRGITANQVTLAACLLSLLVGALV--AGFASHLWLFA 58

Query: 60  LLPLWMFLRMAFNAVDGMLAREFGQQSALGAYLNELTDVFSDAALYLPFALVAPFGWGSV 119
           L+PLWMFLRMA NAVDGMLAREFGQ+S LGAYLNELTDV +D+ LYLPFAL+       V
Sbjct: 59  LVPLWMFLRMALNAVDGMLAREFGQKSDLGAYLNELTDVIADSGLYLPFALLPGVNPLWV 118

Query: 120 GALIFLSAVSEMTGAL 135
             ++ L+ +SE  GAL
Sbjct: 119 VLVVLLAVISEYAGAL 134


>YPO2817 [I] COG0558 Phosphatidylglycerophosphate synthase Ype Yersinia
           pestis
          Length = 200

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 93/134 (69%), Gaps = 2/134 (1%)

Query: 2   ISIYQLKPRFQALLRPMVAALAGAGVTANAVTVLAMLVSLGLGALLWLEGASRPALFLLL 61
           +++Y +KP+FQ LLRP+V  L   GVTAN +T+LAML S+ LG   WL    +P LF+ L
Sbjct: 1   MTLYDIKPQFQNLLRPLVVRLHARGVTANQITLLAMLTSVLLGG--WLICFPQPVLFISL 58

Query: 62  PLWMFLRMAFNAVDGMLAREFGQQSALGAYLNELTDVFSDAALYLPFALVAPFGWGSVGA 121
           P+++F RMA NA+DGMLAREF QQS LGA LNE+ D+ SDAALYL FA ++      V  
Sbjct: 59  PVFLFFRMALNAIDGMLAREFNQQSTLGAILNEVGDIISDAALYLAFAFLSGVSPWLVIL 118

Query: 122 LIFLSAVSEMTGAL 135
           ++ LS ++E  G +
Sbjct: 119 VVLLSWLTEFCGVI 132


>Z2319 [I] COG0558 Phosphatidylglycerophosphate synthase EcZ Escherichia
           coli O157:H7 EDL933
          Length = 203

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 90/135 (66%), Gaps = 2/135 (1%)

Query: 1   MISIYQLKPRFQALLRPMVAALAGAGVTANAVTVLAMLVSLGLGALLWLEGASRPALFLL 60
           ++++YQ+KP FQ+LLRP +  L    VTAN +T+ A+ +SL  G LL L   ++P LFLL
Sbjct: 2   IMTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLITGLLLML--VAQPILFLL 59

Query: 61  LPLWMFLRMAFNAVDGMLAREFGQQSALGAYLNELTDVFSDAALYLPFALVAPFGWGSVG 120
           LP+ +F+RMA NA+DGMLARE  QQ+ LGA LNE  DV SD ALYLPF  +       V 
Sbjct: 60  LPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALYLPFLFLPESNASLVI 119

Query: 121 ALIFLSAVSEMTGAL 135
            ++F + ++E  G L
Sbjct: 120 LMLFCTILTEFCGLL 134


>ECs2010 [I] COG0558 Phosphatidylglycerophosphate synthase Ecs Escherichia
           coli O157:H7
          Length = 203

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 90/135 (66%), Gaps = 2/135 (1%)

Query: 1   MISIYQLKPRFQALLRPMVAALAGAGVTANAVTVLAMLVSLGLGALLWLEGASRPALFLL 60
           ++++YQ+KP FQ+LLRP +  L    VTAN +T+ A+ +SL  G LL L   ++P LFLL
Sbjct: 2   IMTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLITGLLLML--VAQPILFLL 59

Query: 61  LPLWMFLRMAFNAVDGMLAREFGQQSALGAYLNELTDVFSDAALYLPFALVAPFGWGSVG 120
           LP+ +F+RMA NA+DGMLARE  QQ+ LGA LNE  DV SD ALYLPF  +       V 
Sbjct: 60  LPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALYLPFLFLPESNASLVI 119

Query: 121 ALIFLSAVSEMTGAL 135
            ++F + ++E  G L
Sbjct: 120 LMLFCTILTEFCGLL 134