BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0469.p (321 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 338 8e-93 RSp1267 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 268 1e-71 STM0859 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 263 6e-70 BMEII1077 [K] COG0583 Transcriptional regulator Bme Brucella mel... 259 4e-69 RSc1196 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 210 4e-54 >PA0877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 298 Score = 338 bits (868), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 165/289 (57%), Positives = 218/289 (75%) Query: 1 MLFDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLT 60 M FDL DLRLFI IAE SLT+ A R LS A S R+K LE + G+RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAFLSPAAASARVKALEGQLGSRLLYRDSRGVELT 60 Query: 61 PAGHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 PAG LL HA+ M+QVE+LKS+ +Y + G+IRIFANTTAVTEF+PEIL FLA P Sbjct: 61 PAGQRLLQHARLIMRQVEYLKSEFTEYGSDAAGHIRIFANTTAVTEFLPEILAGFLAARP 120 Query: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADA 180 V V L+ERL+ DI+RG+ +G+ D+GI+AGPV GLQ+L+FSTDRLV+A HPLA Sbjct: 121 GVTVDLQERLSRDIVRGVLDGSTDLGIIAGPVAASGLQVLHFSTDRLVMAVPQGHPLAGQ 180 Query: 181 PSLPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIG 240 + TL+++HIGL EG+TLH FL + V + G++L LRIQV SFEA+CRMIE VGIG Sbjct: 181 ARVRLRDTLQFQHIGLPEGTTLHAFLYERVEQMGEQLSLRIQVSSFEAICRMIEGGVGIG 240 Query: 241 ILPRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLVE 289 ++P+SAA+RH +TM+L+ +EL +PW++RERS++V+D++ L R L+E Sbjct: 241 VIPQSAARRHSRTMKLATIELDEPWAIRERSLLVRDLEALPSCLRALIE 289 >RSp1267 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 294 Score = 268 bits (685), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/293 (44%), Positives = 195/293 (66%) Query: 1 MLFDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLT 60 M FDLTDLRLF+ AE S+T AER +L+L + S RI+ +E G LL R +GV+ T Sbjct: 1 MRFDLTDLRLFLHTAESGSITAGAERAHLTLASASARIRGMEAALGVPLLTRNRRGVETT 60 Query: 61 PAGHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 AG TL+HHA+ +QQ+E ++ ++ +Y G+KG++R+ +NT A+TEF+PE L FLA+HP Sbjct: 61 AAGRTLVHHARVVLQQMERMRGELGEYARGLKGHVRLLSNTAAMTEFLPETLSAFLAQHP 120 Query: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADA 180 +V++ LEE ++H+I+ + +G ADIGIV V GL+ F DRLVL TA +HPLA Sbjct: 121 EVDIDLEELVSHEIVEAVAQGRADIGIVNDAVDLSGLETFPFRHDRLVLVTARDHPLAAR 180 Query: 181 PSLPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIG 240 + F+ L+ + +GL + L +L+ A G RLK R+++RSF+A+CRM+E +VG+G Sbjct: 181 REIAFVDALQEDFVGLTGDNALQAYLAGHAARAGHRLKYRVRLRSFDAVCRMVERSVGVG 240 Query: 241 ILPRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLVEFIRE 293 ++P AA R Q++M + V L+D W+ R + V+ D L +AR L+E +RE Sbjct: 241 VIPEHAAIRLQRSMGIRRVGLTDAWATRLLRICVRRFDDLPAYARQLIEHLRE 293 >STM0859 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 296 Score = 263 bits (671), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 130/295 (44%), Positives = 189/295 (64%) Query: 1 MLFDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLT 60 M FD+ DL+LF+ I+E S+TR AE+ +S + S RI+ LE RLLYR SKG+ L+ Sbjct: 1 MHFDIKDLKLFLAISEEGSITRGAEKTYMSAASGSVRIRNLEQSINLRLLYRSSKGITLS 60 Query: 61 PAGHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 AG T HHA + Q+E L+SDMQ++ GIKG++RIF++ TA+ E++P +L FL + Sbjct: 61 SAGETFKHHASLIVNQMEMLRSDMQEHVKGIKGHVRIFSSITAIAEYLPPLLSHFLTLYN 120 Query: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADA 180 VN+ L E + +I+R + EG D+GIVAG + + L+IL F TDRLVL TA +HP AD Sbjct: 121 DVNIDLREYPSPEIVRSVIEGKTDLGIVAGNITTDNLEILPFRTDRLVLITATDHPFADR 180 Query: 181 PSLPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIG 240 S+ F + ++YE I L EG+ + F+ K +LK+RIQV +FE CRM+E VGIG Sbjct: 181 KSVTFHELIQYEQISLPEGTGMFEFIRKKAELVPSKLKIRIQVGNFETFCRMVEAKVGIG 240 Query: 241 ILPRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLVEFIREQT 295 I+P SAA R +Q + S+++L + WS+R+ + + D L + LV + QT Sbjct: 241 IMPHSAASRLRQLHEFSIIDLDEFWSLRKLQICARSFDKLPGFTQKLVTMLTAQT 295 >BMEII1077 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 294 Score = 259 bits (663), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 126/293 (43%), Positives = 191/293 (65%) Query: 1 MLFDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLT 60 M FD+TDLRLF+ IAE S+T A +N++LGA S R++ +E G LL RE GV +T Sbjct: 1 MRFDVTDLRLFVSIAETGSITHGAAMVNMALGAASARVRGMEELAGVALLNRERLGVSIT 60 Query: 61 PAGHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 PAG LL H + +QQ+ + S++ ++ +G+KG++R+F+NT A+ EF+P L FL +P Sbjct: 61 PAGRALLQHGRIVLQQLGRMHSELDEFAHGLKGHVRLFSNTNALAEFLPVALSSFLMDNP 120 Query: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADA 180 VN+ L+E L+ +I+R + EG ADIGIVAG V L+ F D LV+ HP A Sbjct: 121 GVNIDLQEHLSDEIVRSVVEGIADIGIVAGTVDVASLETFPFREDYLVVVVPQGHPFARR 180 Query: 181 PSLPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIG 240 + F TL+Y+ IGL +G+ L +FLS GQRL+LR+Q+RSF+++C+M+E+ GI Sbjct: 181 RRIAFKDTLDYDFIGLSQGAALQNFLSAHAMRMGQRLRLRVQLRSFDSICQMVESRAGIA 240 Query: 241 ILPRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLVEFIRE 293 I+P SAA+R ++ M + ++ L D W++R ++ V+ + L HA LVE +R+ Sbjct: 241 IVPASAAKRLRRIMAIRIIALDDAWALRRLTICVRSLQDLPAHAARLVEHLRQ 293 >RSc1196 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 210 bits (534), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 171/289 (59%), Gaps = 3/289 (1%) Query: 3 FDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLTPA 62 FDL L LF+ +A S++ A + +L++ A S RI +LE G LLYR + GV+LT A Sbjct: 6 FDLVTLGLFVAVARLGSISAGARQSHLAVAAASKRISDLEAAVGAPLLYRHAAGVELTEA 65 Query: 63 GHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQV 122 G HA +Q VE + + + G +G +R++ANT+++T+F+ + L F+ +P + Sbjct: 66 GQACFRHAVGILQDVERMAGALSDFAAGTRGLVRVWANTSSITQFLADDLAAFMLANPAI 125 Query: 123 NVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADAPS 182 +ALEE+ + DI+ ++E AD+GI A EGLQ ++ D L L T HPLA Sbjct: 126 RIALEEQDSGDIVAALRENRADLGIFAAGTPCEGLQSFDYREDDLALVTPRGHPLAGRKQ 185 Query: 183 LPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIGIL 242 F + +++ + L G++L L + G+ L+LRIQVRSFEA+CRM+ + +G+G+L Sbjct: 186 ARFAEAADFDFVSLPPGTSLAAQLLEESQRLGRPLRLRIQVRSFEAVCRMVASGLGVGVL 245 Query: 243 PRSAAQRHQQTMQ---LSVVELSDPWSVRERSMVVQDIDTLSPHARNLV 288 PR AAQ H ++ L++V L D W+ R + V+D D L+ AR L+ Sbjct: 246 PRIAAQAHVSSLPGAGLALVPLDDDWAHRRLLVGVRDPDALTSSARLLM 294