BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0446.p (609 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1276 [L] COG0210 Superfamily I DNA and RNA helicases Rso Rals... 715 0.0 AGl527 [L] COG0210 Superfamily I DNA and RNA helicases Atu Agrob... 707 0.0 SMa2321 [L] COG0210 Superfamily I DNA and RNA helicases Sme Sino... 706 0.0 mlr7946 [L] COG0210 Superfamily I DNA and RNA helicases Mlo Meso... 700 0.0 TM1238 [L] COG0210 Superfamily I DNA and RNA helicases Tma Therm... 302 1e-81 >RSp1276 [L] COG0210 Superfamily I DNA and RNA helicases Rso Ralstonia solanacearum Length = 710 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/564 (61%), Positives = 430/564 (76%), Gaps = 2/564 (0%) Query: 17 LHWSGTFHAIGARLLREYAKVIGLEEDFTIQDRGDSEDLMGLLRHDMGLSATEKRFPLKA 76 L W+GTFH IGARLLREYA+ IGL DFTI DR D+ DL+ ++RH++ LS E+RFPLK Sbjct: 117 LPWAGTFHGIGARLLREYAERIGLAPDFTIHDRSDAADLLNVVRHELNLSTKERRFPLKQ 176 Query: 77 TCLAIYSRAVNTRQALGEVLQQHFPWCCEWERPLGELFGRYVDAKEEQHVLDYDDLLLFW 136 TCLAIYSRA+N L VL+QHFPWC W+ L LF YV+AK+ QH+LDYDDLLL+W Sbjct: 177 TCLAIYSRAINAESPLDAVLKQHFPWCAMWQAQLRTLFDAYVEAKQAQHILDYDDLLLYW 236 Query: 137 ADMLGDAQIAQSVGQRFDHVLVDEYQDTNRLQAEILQRMKPDGAGVTAVGDDAQAIYSFR 196 M+ DA +A +G RFDH+LVDEYQDTNRLQ+ IL+ ++PDG G+T VGDDAQ+IY+FR Sbjct: 237 HAMVADAGLAAEIGARFDHILVDEYQDTNRLQSSILRALRPDGRGLTVVGDDAQSIYAFR 296 Query: 197 GATVRNILDFPGLFTQPVRLLTLEQNYRSTQPILHASNAVIADAPERHVKHLWSDKPSSQ 256 ATVRNILDFP FT+P + LE+NYRSTQPIL ASN V+ A ER K LW+D+ S+ Sbjct: 297 AATVRNILDFPRHFTRPAHTVLLERNYRSTQPILEASNGVMRFATERFAKTLWTDRASTH 356 Query: 257 KPQLVVIPDEAEQARWVANRILAHREEGLTLKSQAVLFRTATHSAALELELARRNIPFVK 316 +P+L+ + DEAEQAR VA ++L HRE GL LKSQAVLFRTA+HSA LE+ELARRNIPFVK Sbjct: 357 RPRLISVRDEAEQARCVAEQVLRHREGGLALKSQAVLFRTASHSAPLEIELARRNIPFVK 416 Query: 317 FGGLKFLESGHIKDLLALLRLAHNPSGRMAGLRALQLIPGVGPATARKVLDLMAVAADPA 376 +GGLKFLE+ H+KD+L++LR A NP R+AG R +QL+PG GPATA +VLD MA AADP Sbjct: 417 YGGLKFLEAAHVKDVLSVLRWAENPRNRIAGFRVIQLLPGAGPATAARVLDTMAEAADPV 476 Query: 377 DALLNFGAPANIALQWQAFADTYALMR--RASASWPTDILAARDWYLPQLQERYDDAQAR 434 ALL PA +A W A A +R + +A+W ++ A WY P ++ +DDA R Sbjct: 477 AALLAHAPPARLAGDWAALMTLMATLRAPKDNATWAGELEAVGAWYAPHMERLHDDAAVR 536 Query: 435 AADIEQLAVLANGYASREKFLTELTLDPPEASSDFSGPPLRDEDYLTLSTIHSAKGQEWR 494 D++QLA +A YASRE+FLTE+TLDPPE +SD SG P RDEDYL LSTIHS+KGQEW+ Sbjct: 537 QGDLDQLARMAATYASRERFLTEMTLDPPELTSDESGEPYRDEDYLILSTIHSSKGQEWK 596 Query: 495 SVHILNVVDGCIPSDLATGSEAEIAEERRLLYVAMTRARQYLHLVVPQRFYITQQTPQGD 554 +V++LN VDGC+P+DL GS E+ EERRLLYVAMTRAR +L ++VPQRFY+TQQTP GD Sbjct: 597 AVYLLNAVDGCMPADLGAGSHDELEEERRLLYVAMTRARDHLDILVPQRFYMTQQTPNGD 656 Query: 555 RHVNGIRSRFITPRMLPHFEDSLW 578 RH+ R+RFI P +LP FE W Sbjct: 657 RHLYASRTRFIPPALLPLFEACAW 680 >AGl527 [L] COG0210 Superfamily I DNA and RNA helicases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 706 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/607 (57%), Positives = 430/607 (70%), Gaps = 1/607 (0%) Query: 1 VISQVLGLAASDTPPQLHWSGTFHAIGARLLREYAKVIGLEEDFTIQDRGDSEDLMGLLR 60 + QV+G ++ L WSGTFH IGARLLR YA+ IGL DFTI DR DS DLM L+R Sbjct: 101 ICKQVIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLNIDFTIHDREDSADLMNLVR 160 Query: 61 HDMGLSATEKRFPLKATCLAIYSRAVNTRQALGEVLQQHFPWCCEWERPLGELFGRYVDA 120 H++G S TE RFP K TCLAIYSRAVN++ L ++L+QH+PW +W+ L ELF YV+A Sbjct: 161 HELGFSKTESRFPTKGTCLAIYSRAVNSQTPLKDILRQHYPWVADWQSELKELFAAYVEA 220 Query: 121 KEEQHVLDYDDLLLFWADMLGDAQIAQSVGQRFDHVLVDEYQDTNRLQAEILQRMKPDGA 180 K+ Q+VLDYDDLLL+WA M+ D +A +G RFDHV+VDEYQDTNRLQA +L MKP G Sbjct: 221 KQIQNVLDYDDLLLYWAQMVSDPILADDIGNRFDHVMVDEYQDTNRLQASVLMAMKPGGR 280 Query: 181 GVTAVGDDAQAIYSFRGATVRNILDFPGLFTQPVRLLTLEQNYRSTQPILHASNAVIADA 240 G+T VGDDAQ+IYSFR ATVRNILDFP F ++TL++NYRSTQPIL A+N VI A Sbjct: 281 GLTVVGDDAQSIYSFRAATVRNILDFPACFNPAADIITLDRNYRSTQPILAAANGVIDLA 340 Query: 241 PERHVKHLWSDKPSSQKPQLVVIPDEAEQARWVANRILAHREEGLTLKSQAVLFRTATHS 300 ER K+LW+++ S ++P+LV + DE EQA ++ ++ILA+RE G TLK QAVLFRT++HS Sbjct: 341 RERFTKNLWTERQSLERPKLVTVKDETEQANFIIDQILANRETGTTLKQQAVLFRTSSHS 400 Query: 301 AALELELARRNIPFVKFGGLKFLESGHIKDLLALLRLAHNPSGRMAGLRALQLIPGVGPA 360 LE+EL RRNIPFVKFGGLKFL+S H+KD+LA+LR A NP R+AG R LQ++PG+GP Sbjct: 401 GPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQNPRDRVAGFRLLQMLPGIGPK 460 Query: 361 TARKVLDLMAVAADPADALLNFGAPANIALQWQAFADTYALMRRASASWPTDILAARDWY 420 A +LD +A +P AL P W AF +RR WP +I AR WY Sbjct: 461 KAGNILDTIAPDPEPLLALAEIPPPPKTGDDWTAFTQLLVGLRRGPNGWPGEIGLARLWY 520 Query: 421 LPQLQERYDDAQARAADIEQLAVLANGYASREKFLTELTLDPPEASSDFSGPPLRDEDYL 480 P L+ ++DA R AD++QL +A GY SRE+FLTELTLDPP+A+SD +G PL DEDYL Sbjct: 521 EPHLERIHEDADTRKADLQQLEQIAGGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYL 580 Query: 481 TLSTIHSAKGQEWRSVHILNVVDGCIPSDLATGSEAEIAEERRLLYVAMTRARQYLHLVV 540 +LSTIHSAKGQEWRSV ILNVVDGCIPSDL G+ E+ EERRLLYVAMTRA+ L L+ Sbjct: 581 SLSTIHSAKGQEWRSVFILNVVDGCIPSDLGVGTSQELEEERRLLYVAMTRAKDNLSLIT 640 Query: 541 PQRFYITQQTPQGDRHVNGIRSRFITPRMLPHFEDSLWFSAETNGARTPMPESVRMLVRQ 600 PQRF+ Q+ QGDRHV R+RFI +L FE W + A + +R+ V Sbjct: 641 PQRFFTGGQSSQGDRHVYAARTRFIPATLLQFFETMSW-PLVSIAASERSAQQIRIDVGA 699 Query: 601 RARQSWN 607 R R W Sbjct: 700 RMRAMWK 706 >SMa2321 [L] COG0210 Superfamily I DNA and RNA helicases Sme Sinorhizobium meliloti Length = 689 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/606 (56%), Positives = 436/606 (71%), Gaps = 1/606 (0%) Query: 1 VISQVLGLAASDTPPQLHWSGTFHAIGARLLREYAKVIGLEEDFTIQDRGDSEDLMGLLR 60 + +QVLG ++ L W+GTFH IGARLLR YA+ IGL +FTI DR DS DL+ L+R Sbjct: 84 ICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIR 143 Query: 61 HDMGLSATEKRFPLKATCLAIYSRAVNTRQALGEVLQQHFPWCCEWERPLGELFGRYVDA 120 H++G S TE RFP K TCLAIYSR VN L EVL+ +PW WE+ L ELF YV+A Sbjct: 144 HELGFSKTESRFPTKGTCLAIYSRTVNAEMRLNEVLRSWYPWVAGWEQQLQELFAGYVEA 203 Query: 121 KEEQHVLDYDDLLLFWADMLGDAQIAQSVGQRFDHVLVDEYQDTNRLQAEILQRMKPDGA 180 K+ Q+VLDYDDLLL+WA M+ DA +A +G RFD+VLVDEYQDTN+LQ+ +L +KPDG Sbjct: 204 KQAQNVLDYDDLLLYWAQMVSDASLADDIGNRFDYVLVDEYQDTNKLQSSVLLALKPDGR 263 Query: 181 GVTAVGDDAQAIYSFRGATVRNILDFPGLFTQPVRLLTLEQNYRSTQPILHASNAVIADA 240 G+T VGDDAQ+IYSFR ATVRNILDFP F ++TL++NYRSTQPIL A+N VI A Sbjct: 264 GLTVVGDDAQSIYSFRAATVRNILDFPKQFAPAAEIVTLDRNYRSTQPILAAANGVIDLA 323 Query: 241 PERHVKHLWSDKPSSQKPQLVVIPDEAEQARWVANRILAHREEGLTLKSQAVLFRTATHS 300 ER K+LW+D+ S+++P+L+ + DEA+QA + ++LA+RE G+ LK QAVLFRT++HS Sbjct: 324 RERFTKNLWTDRESAERPKLLTVKDEADQANCIVEQVLANRESGMLLKQQAVLFRTSSHS 383 Query: 301 AALELELARRNIPFVKFGGLKFLESGHIKDLLALLRLAHNPSGRMAGLRALQLIPGVGPA 360 LE+EL RRNIPFVKFGGLKFL+S H+KD+LA+LR A NP R+AG R LQ++PGVGP Sbjct: 384 GPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQNPRDRVAGFRLLQMLPGVGPQ 443 Query: 361 TARKVLDLMAVAADPADALLNFGAPANIALQWQAFADTYALMRRASASWPTDILAARDWY 420 TA K+LD +A +P AL AP W + + +R+ ++WPT+I AR WY Sbjct: 444 TAGKILDTIAADPEPLMALGEVPAPPRSGTDWMSLVELLQALRKPGSAWPTEIEMARMWY 503 Query: 421 LPQLQERYDDAQARAADIEQLAVLANGYASREKFLTELTLDPPEASSDFSGPPLRDEDYL 480 P L+ ++DA+ R AD+ QL +A GY SRE+FLTELTLDPP+A+SD +G PL DEDYL Sbjct: 504 EPHLERIHEDAETRRADLVQLEQIAAGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYL 563 Query: 481 TLSTIHSAKGQEWRSVHILNVVDGCIPSDLATGSEAEIAEERRLLYVAMTRARQYLHLVV 540 LSTIHSAKGQEWRSV +LNVVDGCIPSDLATG+ E+ EERRLLYV MTRA+ L L+V Sbjct: 564 ILSTIHSAKGQEWRSVFMLNVVDGCIPSDLATGTSHELEEERRLLYVGMTRAKDQLALMV 623 Query: 541 PQRFYITQQTPQGDRHVNGIRSRFITPRMLPHFEDSLWFSAETNGARTPMPESVRMLVRQ 600 PQRF+ Q QGDRHV R+RFI +L FE + W A N + + +R+ V Sbjct: 624 PQRFFTGGQHAQGDRHVYASRTRFIPATLLQFFESANWPVASPNVSERSAKQ-IRIDVAA 682 Query: 601 RARQSW 606 R R W Sbjct: 683 RMRTMW 688 >mlr7946 [L] COG0210 Superfamily I DNA and RNA helicases Mlo Mesorhizobium loti Length = 697 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/607 (57%), Positives = 431/607 (71%), Gaps = 2/607 (0%) Query: 1 VISQVLGLAASDTPPQLHWSGTFHAIGARLLREYAKVIGLEEDFTIQDRGDSEDLMGLLR 60 + +VLG A+ L W+GTFH IGARLLR+YA IGL+ FTI DR DS DLM L R Sbjct: 93 IAGEVLGRDAAVITDALTWAGTFHGIGARLLRDYALEIGLDPAFTIHDREDSADLMNLAR 152 Query: 61 HDMGLSATEKRFPLKATCLAIYSRAVNTRQALGEVLQQHFPWCCEWERPLGELFGRYVDA 120 H++G S TE RFP K TCLAIYSRAVN + L EVL FPWC W L +LF YV+A Sbjct: 153 HELGFSKTEARFPTKGTCLAIYSRAVNAQAPLNEVLGSAFPWCAGWAEQLKQLFAGYVEA 212 Query: 121 KEEQHVLDYDDLLLFWADMLGDAQIAQSVGQRFDHVLVDEYQDTNRLQAEILQRMKPDGA 180 K+ Q+VLDYDDLLL+WA M + +IA+ +G RFDHVLVDEYQDTNRLQA IL +KPDGA Sbjct: 213 KQAQNVLDYDDLLLYWAQMTAEPEIAEHLGSRFDHVLVDEYQDTNRLQASILMALKPDGA 272 Query: 181 GVTAVGDDAQAIYSFRGATVRNILDFPGLFTQPVRLLTLEQNYRSTQPILHASNAVIADA 240 G+T VGDDAQ+IYSFR A VRNILDFP F Q ++ LE+NYRST+ IL A+NAVI +A Sbjct: 273 GLTVVGDDAQSIYSFRAAEVRNILDFPRQFAQAADVVMLERNYRSTETILAAANAVIGEA 332 Query: 241 PERHVKHLWSDKPSSQKPQLVVIPDEAEQARWVANRILAHREEGLTLKSQAVLFRTATHS 300 ER K+LWS++ S+ KP+LV + DE EQA +V + ILA RE G LKSQAVLFR + HS Sbjct: 333 SERFTKNLWSERKSTDKPRLVSVRDEVEQANFVCDTILAEREAGTALKSQAVLFRASHHS 392 Query: 301 AALELELARRNIPFVKFGGLKFLESGHIKDLLALLRLAHNPSGRMAGLRALQLIPGVGPA 360 LE+EL RRNIPFVKFGGLKFL++ H+KD+LA+LR A NP R+AG R LQL+PG+GP+ Sbjct: 393 GPLEIELTRRNIPFVKFGGLKFLDAAHVKDVLAVLRFAENPRDRVAGFRVLQLMPGIGPS 452 Query: 361 TARKVLDLMAVAADPADALLNFGAPANIALQWQAFADTYALMRRASASWPTDILAARDWY 420 A ++++ M A D A L + P A W F Y+ + RA A WP D+ R WY Sbjct: 453 AAAQIVETMTTALDEAMGLAGWRPPQRAADDWPGFVSLYSGL-RAGAKWPADLEQVRLWY 511 Query: 421 LPQLQERYDDAQARAADIEQLAVLANGYASREKFLTELTLDPPEASSDFSGPPLRDEDYL 480 P L+ ++DA R AD+ QL + +GYASRE+FLTELTLDPP+A+SD +GPP RDEDYL Sbjct: 512 EPHLERIHEDAITRRADLLQLEQIGSGYASRERFLTELTLDPPDATSDQAGPPHRDEDYL 571 Query: 481 TLSTIHSAKGQEWRSVHILNVVDGCIPSDLATGSEAEIAEERRLLYVAMTRARQYLHLVV 540 LSTIHSAKGQEW++V +LN VDGCIP+DL G++ +I EERRLLYVAMTRA+ L+LV+ Sbjct: 572 ILSTIHSAKGQEWKNVFVLNTVDGCIPADLGVGTKEDIEEERRLLYVAMTRAKDSLNLVM 631 Query: 541 PQRFYITQQTPQGDRHVNGIRSRFITPRMLPHFEDSLWFSAETNGARTPMPESVRMLVRQ 600 PQRF+ Q +GDRH+ R+RFI +L F+ W A+ R P P+ VR+ + Sbjct: 632 PQRFFPHGQAARGDRHLYASRTRFIPASILSAFQQMSWPGAQAAQGRAPRPD-VRVDIGA 690 Query: 601 RARQSWN 607 R R W Sbjct: 691 RMRGMWK 697 >TM1238 [L] COG0210 Superfamily I DNA and RNA helicases Tma Thermotoga maritima Length = 648 Score = 302 bits (774), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 187/528 (35%), Positives = 286/528 (54%), Gaps = 22/528 (4%) Query: 20 SGTFHAIGARLLREYAKVIGLEEDFTIQDRGDSEDLMGLLRH---DMGLSATEKRFPLKA 76 +GTFH + LR+YA +GLE +++I DR D+E LM R + K FP + Sbjct: 95 AGTFHHVCNHFLRKYAPYVGLERNYSILDREDAESLMRHARSKYLERKSKEERKNFPQPS 154 Query: 77 TCLAIYSRAVNTRQALGEVLQQHFPWCCEWERPLGELFGRYVDAKEEQHVLDYDDLLLFW 136 +AIYS NT ++L E + P + + + E+F Y K Q+V+DY+DLL + Sbjct: 155 VLMAIYSYMKNTLKSLRESIVVKNPKFLDLKEEISEIFDLYEQEKRSQNVVDYEDLLFYA 214 Query: 137 ADMLG-DAQIAQSVGQRFDHVLVDEYQDTNRLQAEILQRMKPDGAGVTAVGDDAQAIYSF 195 + + +I +RF +LVDE+QDTN +Q +I++ + + AVGDDAQ+IYSF Sbjct: 215 YRLFEENKEIRDREAERFLWILVDEFQDTNYVQYKIVEHLSSKHGNILAVGDDAQSIYSF 274 Query: 196 RGATVRNILDF---PGLFTQPVRLLTLEQNYRSTQPILHASNAVIADAPERHV-KHLWSD 251 RGA N+ DF PG ++ ++ NYRST+ I+ NA++ P + V K L Sbjct: 275 RGARYENVEDFIRVPG-----TKIFKIQTNYRSTESIVKFINAML---PRKSVPKELKPV 326 Query: 252 KPSSQKPQLVVIPDEAEQARWVANRILAHREEGLTLKSQAVLFRTATHSAALELELARRN 311 K KP +V D E+AR+V+ RIL EEG + AVL+R+ +HS L++EL R Sbjct: 327 KKDGMKPVVVKTWDRYEEARFVSQRILELIEEGFKPEEIAVLYRSHSHSLELQMELVRSR 386 Query: 312 IPFVKFGGLKFLESGHIKDLLALLRLAHNPSGRMAGLRALQLIPGVGPATARKVLDLMAV 371 I F G +F ES H+KD+L+ LR+ NP + A LRA +L G+G TA K+ DL + Sbjct: 387 IDFRVLSGPRFTESAHVKDVLSFLRIVQNPRDKSAWLRAAKLFYGIGDRTASKIADLASA 446 Query: 372 AADPADALLNFGAPANIALQWQAFADTYALMRRASASWPTDILAARDWYLPQLQERYDDA 431 + + + ++ F D +R+ + +Y L+ RY D Sbjct: 447 YVEEGLDPFQELKKVSFSGEYSRFIDILDQIRKLDSPGEMIERVLSSFYSEYLEARYPDF 506 Query: 432 QARAADIEQLAVLANGYASREKFLTELTL-DPPEASSDFSGPPLRDEDYLTLSTIHSAKG 490 + R D+E+L +A+ Y S E FLT+L + + E + S + E +TL+T+H AKG Sbjct: 507 REREMDLERLVEIASRYTSLESFLTDLAVTENVEIEREIS----QKEGKVTLTTVHQAKG 562 Query: 491 QEWRSVHILNVVDGCIPSDLATGSEAEIAEERRLLYVAMTRARQYLHL 538 EWR V +++V G P+ A SE + EE R+ YVA+TRA++ L++ Sbjct: 563 LEWRVVFVISVNPGDFPNYFAI-SEGNLDEEERIFYVAITRAKEQLYI 609