BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0435.p (284 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1127 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-pho... 482 e-136 XF1289 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phos... 399 e-111 FN1224 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phos... 300 4e-81 RP062 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosp... 278 1e-74 RC0090 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phos... 272 5e-73 >RSc1127 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Rso Ralstonia solanacearum Length = 284 Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/283 (85%), Positives = 262/283 (92%) Query: 1 MKLCGFDVGLDHPFFLIAGTCVIESEQMALDTAGTLKEITAELGIPFIYKSSFDKANRSS 60 MKLC F++GLD PFFLIAGTCVIESEQMA+DTAGTLKEIT LGIPFIYKSSFDKANRSS Sbjct: 1 MKLCDFEIGLDRPFFLIAGTCVIESEQMAIDTAGTLKEITGALGIPFIYKSSFDKANRSS 60 Query: 61 GSSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 +SFRGLGME+GL ILA+V++++GVPVLTDIHEIDEIKPVA+VVDVLQTPAFLCRQTDFI Sbjct: 61 DASFRGLGMEEGLRILAEVRRQVGVPVLTDIHEIDEIKPVASVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGVSFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM NVIDKAR AA++AGLP D FMACERG SFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMKNVIDKARHAARDAGLPEDSFMACERGASFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAA+A G++GVFMETH Sbjct: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGVFMETH 240 Query: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKKAGFLENHF 283 P+PA AKSDGPNAVPL RMKDLL + +LD + K+ GFLEN F Sbjct: 241 PDPACAKSDGPNAVPLRRMKDLLSVLKELDTLTKRNGFLENQF 283 >XF1289 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Xfa Xylella fastidiosa 9a5c Length = 295 Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/281 (69%), Positives = 224/281 (79%), Gaps = 6/281 (2%) Query: 1 MKLCGFDVGLDHPFFLIAGTCVIESEQMALDTAGTLKEITAELGIPFIYKSSFDKANRSS 60 MKLCGF+VGL+ P FLIAG CVIES Q+ LDTAG LKEIT++LG+ FI+KSSFDKANR+S Sbjct: 20 MKLCGFEVGLNQPLFLIAGPCVIESLQLQLDTAGVLKEITSKLGLNFIFKSSFDKANRTS 79 Query: 61 GSSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 GSSFRG G+E+GL++L VK +IGVPVLTD+HE I VA VVDVLQTPAFL RQTDFI Sbjct: 80 GSSFRGPGLEEGLKVLEAVKTQIGVPVLTDVHEYTPIDEVATVVDVLQTPAFLVRQTDFI 139 Query: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGVSFGYNNLVS 180 R GKPVNIKKGQFL+P DM V++KA++ Q + CERG SFGYNNLVS Sbjct: 140 RNVCAVGKPVNIKKGQFLSPWDMKPVVEKAKSTGN------SQILVCERGASFGYNNLVS 193 Query: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 DMRSLA+MRETG PVVFDATHSVQLPG QG SGGQREFVPVLARAA+AVGISG+F ETH Sbjct: 194 DMRSLAVMRETGCPVVFDATHSVQLPGAQGGRSGGQREFVPVLARAAVAVGISGLFAETH 253 Query: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKKAGFLEN 281 P+P A SDGPNA PL M LL T+++LD + KK GFLE Sbjct: 254 PDPPNALSDGPNAWPLHTMAMLLETLVELDAVTKKRGFLEQ 294 >FN1224 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Fnu Fusobacterium nucleatum Length = 286 Score = 300 bits (767), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 142/261 (54%), Positives = 190/261 (72%), Gaps = 6/261 (2%) Query: 14 FFLIAGTCVIESEQMALDTAGTLKEITAELGIPFIYKSSFDKANRSSGSSFRGLGMEKGL 73 F LIAG CV+ES+++ + AG +KEI LGI +I+K+SFDKANRSS S+RG G+E+G+ Sbjct: 30 FVLIAGPCVMESQELMDEVAGGIKEICDRLGIEYIFKASFDKANRSSIYSYRGPGLEEGM 89 Query: 74 EILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFIRACAQSGKPVNIK 133 ++L K+K++ VPV+TD+HE + K VA V D+LQ PAFLCRQTD + A A++GK VNIK Sbjct: 90 KMLTKIKEKFNVPVITDVHEAWQCKEVAKVADILQIPAFLCRQTDLLIAAAETGKAVNIK 149 Query: 134 KGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGVSFGYNNLVSDMRSLAIMRETGA 193 KGQFLAP DM N++ K + + M CERG +FGYNN+V DMRSL MR+ Sbjct: 150 KGQFLAPWDMKNIVVKMEESRNK------NIMLCERGSTFGYNNMVVDMRSLLEMRKFNY 203 Query: 194 PVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETHPNPAEAKSDGPNA 253 PV+FD THSVQ PGG GT++ G RE+V L RA +A+G+ +F E HPNPAEAKSDGPN Sbjct: 204 PVIFDVTHSVQKPGGLGTATSGDREYVYPLLRAGLAIGVDAIFAEVHPNPAEAKSDGPNM 263 Query: 254 VPLARMKDLLGTMIDLDRIVK 274 + L ++++L I++D+IVK Sbjct: 264 LYLKDLEEILKIAIEIDKIVK 284 >RP062 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Rpr Rickettsia prowazekii Length = 275 Score = 278 bits (710), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 151/275 (54%), Positives = 191/275 (69%), Gaps = 6/275 (2%) Query: 1 MKLCGFDVGLDHPFFLIAGTCVIESEQMALDTAGTLKEITAELGIPFIYKSSFDKANRSS 60 +KL +G D F LIAG C IE + AL A L ++T++L IPFIYKSSFDKANR+S Sbjct: 5 VKLNNIKIGNDLQFVLIAGPCQIEGKDHALFMAEKLMKLTSKLSIPFIYKSSFDKANRTS 64 Query: 61 GSSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 + RGLG+EKGLEIL+KVK E P++TD+H + A VVD+LQ PAFLCRQTD + Sbjct: 65 INGIRGLGIEKGLEILSKVKSEFDCPIITDVHSESQCIETAKVVDILQIPAFLCRQTDLL 124 Query: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGVSFGYNNLVS 180 +A A++GK V +KKGQFLAP DM NV K + L T ERG FGYNNLVS Sbjct: 125 KAAAKTGKIVKVKKGQFLAPWDMKNVQKKLEVFGAKDILFT------ERGSCFGYNNLVS 178 Query: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 DMRSLAIM E PVVFDATHSVQ PGG+G SSGG+R++V +LA+AAI+VGI+G++ME H Sbjct: 179 DMRSLAIMSELNVPVVFDATHSVQQPGGRGGSSGGERKYVELLAKAAISVGIAGIYMEVH 238 Query: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKK 275 +P A SDGP + L ++ +L + D+I K+ Sbjct: 239 QDPDNAPSDGPCMIKLDNLESILIKLKKYDKITKE 273 >RC0090 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Rco Rickettsia conorii Length = 274 Score = 272 bits (696), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 148/275 (53%), Positives = 188/275 (68%), Gaps = 6/275 (2%) Query: 1 MKLCGFDVGLDHPFFLIAGTCVIESEQMALDTAGTLKEITAELGIPFIYKSSFDKANRSS 60 +KL +G D PF LI G C IE + AL A L ++T++L IPFIYKSSFDKANR+S Sbjct: 5 VKLNNIKIGNDLPFVLITGPCQIEGKDHALFMAEKLVKLTSKLEIPFIYKSSFDKANRTS 64 Query: 61 GSSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 RG+G+EKGLEIL+KVK E P++TD+H + A V D+LQ PAFLCRQTD + Sbjct: 65 VHGIRGVGIEKGLEILSKVKSEFDCPIVTDVHSESQCTETAEVADILQIPAFLCRQTDLL 124 Query: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGVSFGYNNLVS 180 +A A++GK V +KKGQFLAP DM NV K A + L T ERG FGYNNLVS Sbjct: 125 QAAAKTGKIVKVKKGQFLAPWDMKNVQTKLEAFGVKDILFT------ERGACFGYNNLVS 178 Query: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 DMRSLAIM E PVVFDATHSVQ PGG G S+GG+R++V +LA+AA +VGI+G++ME H Sbjct: 179 DMRSLAIMAELNVPVVFDATHSVQQPGGLGGSTGGERKYVELLAKAATSVGIAGIYMEVH 238 Query: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKK 275 +P A SDGP + L ++ +L + D+I K+ Sbjct: 239 QDPDNAPSDGPCMMKLDNLESILIKLKKYDKITKE 273