BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0420.p (299 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF1455_2 [T] COG0642 Signal transduction histidine kinase Xfa Xy... 77 7e-14 AGl3043 [T] COG4191 Signal transduction histidine kinase regulat... 75 2e-13 PA5484 [T] COG0642 Signal transduction histidine kinase Pae Pseu... 74 3e-13 AGc2063 [T] COG0642 Signal transduction histidine kinase Atu Agr... 74 5e-13 VC1925 [T] COG4191 Signal transduction histidine kinase regulati... 72 2e-12 >XF1455_2 [T] COG0642 Signal transduction histidine kinase Xfa Xylella fastidiosa 9a5c Length = 233 Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 7/235 (2%) Query: 58 LAQHQVATDLMVARQFESFNRMSTFVVHDLKNLVAQLSLLMANAERHKDNPEFQR--DMI 115 L + V ++LM A++ ES ++ HDL+N++ L ++ D+P+ ++ ++ Sbjct: 1 LERQHVESELMRAQRLESLAMLAAGFSHDLRNILQPLLIVPDLLAGRTDDPQLRQLVSIV 60 Query: 116 DTVDFSVQKMRLLLHKLSRKDSAERNEVI--ALEPLLQRILHAKAGFGPAARLIVAASGL 173 +M + R + R V+ L +Q +L + A + L Sbjct: 61 AECGRRGHEMAESMLSFVRGSNKPRERVLLADLFQTVQLLLRSSVPDCIAVLMEECEEDL 120 Query: 174 QVTADVERLERVIGHLVQNALEAVAPVTGQVDVRLDR-VGEQALVEIIDNGHGMSEQFIR 232 V A+ L++ + +L NA+ A+ P G++ + +R G++ + + D G GMSE+ R Sbjct: 121 SVEANHTELQQCLLNLALNAIHAM-PTGGRLTLVAERHDGDRICISVTDTGIGMSEE-TR 178 Query: 233 ERLFKPFETTKSAGMGIGVFESREYLHLLGGELQVQSTEGAGTRMGMRLPLHVSA 287 RLF PF TTKS G G+G+ + GG +QV S G GTR + LP A Sbjct: 179 ARLFSPFFTTKSDGTGLGLISCKRIAESYGGLIQVCSELGVGTRFDLILPARAPA 233 >AGl3043 [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 633 Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 21/235 (8%) Query: 61 HQVATDLMVARQFESFNRMSTFVVHDLKNLVAQLSLLMANAERHKDNPEFQRDMIDTVDF 120 V +L+ A + +++ V H++ VA + NA +RD + + Sbjct: 403 RNVQHELVQANRLSILGQVAAGVAHEINQPVATIRAFADNARTL-----LKRDRLAEANE 457 Query: 121 SVQKMRLLLHKLSRKDSA----ERNEVIALEPLLQRILHAKA---------GFGPAARLI 167 +++ + L ++ + R A EP+ R++ A G A ++ Sbjct: 458 NLEDIAALTERIGTITTDLKILARKGRTAAEPVSARLVIEGAVVLLRSRFSGQMDALDIV 517 Query: 168 VAASGLQVTADVERLERVIGHLVQNALEAVAPV-TGQVDVRLDRVGEQALVEIIDNGHGM 226 + L+V RLE+++ +L+QNALEA + T +V+VR+ G+ ++ + DNG G+ Sbjct: 518 LPDQDLKVLGSRIRLEQILINLLQNALEATETIETARVEVRVREEGDMVVISVSDNGAGI 577 Query: 227 SEQFIRERLFKPFETTKSAGMGIGVFESREYLHLLGGELQVQSTEGAGTRMGMRL 281 E IR +LF PF T+K +G+G+G+ S + GG ++V S+ GAGT + L Sbjct: 578 PEA-IRAQLFSPFNTSKESGLGLGLVISNDIASDYGGRIEVTSS-GAGTSFSVYL 630 >PA5484 [T] COG0642 Signal transduction histidine kinase Pae Pseudomonas aeruginosa Length = 595 Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 125/264 (47%), Gaps = 29/264 (10%) Query: 39 LNWEVTDLLKIAGRQAGSFLAQHQVATDLMVARQFESFNRMSTFVV---HDLKNLVAQLS 95 L W + + G G+ L V D+ R FE S FV+ H+L+ V + Sbjct: 342 LAWSLYPVTHPGGHSVGAVL----VVRDVTEQRAFERVR--SEFVLRASHELRTPVTGMQ 395 Query: 96 LLMANAERHKDNPEFQR--DMIDTVDFSVQKMRLLLHKL---SRKDSAERNEVIALEPLL 150 + + D P R D+I TVD + ++ LL++ L SR + + +A L+ Sbjct: 396 MAFSLLRERLDFPAESREADLIQTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLV 455 Query: 151 QRILHAKAGFGPAARLIVAASGLQVTADVERL-------ERVIGHLVQNALEAVAPVTGQ 203 + A+ F P + L++ ++ RL ERVI +L++NAL + GQ Sbjct: 456 DLLTQAQQRFIPKGEARRVSLQLELGDELPRLQLDRLQIERVIDNLLENALRHSSE-GGQ 514 Query: 204 VDVRLDRVGEQALVEIIDNGHGM--SEQFIRERLFKPFETT--KSAGMGIGVFESREYLH 259 + ++ R G++ L+ + DNG G+ S+Q R+F+PF K G G+G+ +E + Sbjct: 515 IHLQARRQGDRVLIAVEDNGEGIPFSQQ---GRIFEPFVQVGRKKGGAGLGLALCKEIIQ 571 Query: 260 LLGGELQVQSTEGAGTRMGMRLPL 283 L GG + V+S G G R M LP+ Sbjct: 572 LHGGRIAVRSQPGQGARFYMLLPV 595 >AGc2063 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 553 Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 4/106 (3%) Query: 171 SGLQVTADVERLERVIGHLVQNALEAVAPVTGQ--VDVRLDRVGEQALVEIIDNGHGMSE 228 + L V AD +E+V+ +L++NAL+A V G+ + RL R G+ A+ E+ DNG G++ Sbjct: 434 TPLSVRADPVEMEQVMFNLLRNALDAPTDVEGRKAITARLSRKGDFAVFEVADNGPGVAP 493 Query: 229 QFIRERLFKPFETTKSAGMGIGVFESREYLHLLGGE-LQVQSTEGA 273 +R+RLF PF TTK GMG+G+ S+ + GGE L V S GA Sbjct: 494 D-LRDRLFTPFVTTKKDGMGLGLALSQRLVERAGGEILYVDSENGA 538 >VC1925 [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system Vch Vibrio cholerae Length = 597 Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 17/237 (7%) Query: 59 AQHQVATDLMVARQFESFNRMSTFVVHDLKNLVAQLSLLMANAERH--KDNPEFQRDMID 116 A Q +L+ A + +MS + H+L N +A + N R + PE + + Sbjct: 357 ALRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLS 416 Query: 117 TVDFSVQKMRLL---LHKLSRKDSAERNEVIALEPLLQRILHAKAGFGPAARLIVAASGL 173 + ++M + L +RK ++ + + L PL+ G A ++ L Sbjct: 417 RISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDL 476 Query: 174 QVTADVE----RLERVIGHLVQNALEAVAPVTGQ----VDVRLDRVGEQALVEIIDNGHG 225 + V +LE+V+ +L+ NAL+A+ GQ V +RL +Q + + DNG G Sbjct: 477 ETPVWVRVNPIQLEQVLINLLTNALQALE---GQAERVVQIRLQTSEQQIALFVDDNGPG 533 Query: 226 MSEQFIRERLFKPFETTKSAGMGIGVFESREYLHLLGGELQVQSTEGAGTRMGMRLP 282 + + + LF+PF TTK G+G+G+ S++ LH + G L V ++ G R + LP Sbjct: 534 VGIETL-PHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLP 589