BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0406.p (390 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2026 [R] COG0385 Predicted Na+-dependent transporter Pae Pseud... 414 e-115 SMc04030 [R] COG0385 Predicted Na+-dependent transporter Sme Sin... 379 e-105 AGl1918 [R] COG0385 Predicted Na+-dependent transporter Atu Agro... 355 1e-97 ZyfeH [R] COG0385 Predicted Na+-dependent transporter EcZ Escher... 351 2e-96 ECs3282 [R] COG0385 Predicted Na+-dependent transporter Ecs Esch... 351 2e-96 >PA2026 [R] COG0385 Predicted Na+-dependent transporter Pae Pseudomonas aeruginosa Length = 333 Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust. Identities = 212/314 (67%), Positives = 262/314 (83%), Gaps = 1/314 (0%) Query: 30 MARPRFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVV 89 M+RPRFLPDN TL L+A V+ A+ LPC+GQ A VF+ +T IGLLFF+HGAKLSR+A++ Sbjct: 1 MSRPRFLPDNFTLALIATVLLATFLPCSGQTAVVFEWVTNIGIGLLFFLHGAKLSRQAII 60 Query: 90 AGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFT 149 AG THW+LH+ V CTF +FPL+GLA KP L+P +TPELYLG+LFLC LP+TVQSSIAFT Sbjct: 61 AGMTHWRLHLLVFACTFVMFPLLGLALKPALSPMVTPELYLGILFLCALPATVQSSIAFT 120 Query: 150 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGAGHSSLDSILKIVYQLLLPFVA 209 S+ARGNVPAA+C+AS S+LLG+FLTPLLV +L+ A +G ++LD+I KI QLL+PF+A Sbjct: 121 SLARGNVPAAVCSASVSSLLGVFLTPLLVKLLLGA-EGETGNALDAIGKITLQLLVPFIA 179 Query: 210 GQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINA 269 GQ+ R WIG W+ERNK L++VDQ SILLVVY AFS AV+QGLWH+VP L+ L V Sbjct: 180 GQVLRRWIGAWVERNKPVLRYVDQGSILLVVYTAFSAAVIQGLWHEVPWLALLGLTVACC 239 Query: 270 VLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 329 V+LAL + LTT +RRLGFSKEDEITIVFCGSKKSLA+GVPMAKVLF++ A+G ++LP+M Sbjct: 240 VILALALVLTTVLARRLGFSKEDEITIVFCGSKKSLATGVPMAKVLFATSAVGPMVLPLM 299 Query: 330 LFHQLQLMVCAVLA 343 LFHQ+QLMVCAVLA Sbjct: 300 LFHQIQLMVCAVLA 313 >SMc04030 [R] COG0385 Predicted Na+-dependent transporter Sme Sinorhizobium meliloti Length = 331 Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/324 (61%), Positives = 241/324 (74%), Gaps = 7/324 (2%) Query: 34 RFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVVAGFT 93 R+LPD T+LL+ V A++LP G A F T +GL+FF+HGA+LSRE V+AGF Sbjct: 3 RYLPDTFTILLMLTVALAAVLPIDGTAAAWFAIATKLGVGLIFFLHGARLSREVVIAGFL 62 Query: 94 HWKLHVTVLLCTFALFPLVGL--AFKPLLTPFITP-ELYLGLLFLCVLPSTVQSSIAFTS 150 HW+LH+ +L TFALFPL+GL F P P+I P LY G+LFLCVLPSTVQSSIAFTS Sbjct: 63 HWRLHIAILFSTFALFPLIGLLIGFVP---PWILPPSLYTGILFLCVLPSTVQSSIAFTS 119 Query: 151 VARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGAGHSSLDSILKIVYQLLLPFVAG 210 +A GNVPAA+CAASASN+LG+FLTPLLVGV+ A G G SLD+I +I+ QLL PFVAG Sbjct: 120 MAGGNVPAAVCAASASNILGVFLTPLLVGVIFSA-GGHGGVSLDAIEQILLQLLAPFVAG 178 Query: 211 QIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINAV 270 QI +PWIG WI K L VD+ SIL+VVY+AFS+AV GLWH +S L L+ I V Sbjct: 179 QILQPWIGDWIRARKKLLAPVDRGSILMVVYLAFSQAVTAGLWHAFTLSDLTILIAIEIV 238 Query: 271 LLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVML 330 LLALI+ TT+GSR LGF + DEI I FCGSKKSLASG+PMA +F+ IGM++LPVML Sbjct: 239 LLALILTATTFGSRLLGFDRADEIAITFCGSKKSLASGIPMASAIFAGQNIGMIVLPVML 298 Query: 331 FHQLQLMVCAVLAARYGARQEEVE 354 FHQ+QLM CAV+A RY A+ E+E Sbjct: 299 FHQIQLMACAVIAQRYAAKAAELE 322 >AGl1918 [R] COG0385 Predicted Na+-dependent transporter Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 345 Score = 355 bits (911), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 183/318 (57%), Positives = 237/318 (74%) Query: 34 RFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVVAGFT 93 RFLPD T++L+A V+ AS+LP +G+ A F T I LLFF+HGA+LSR+ V+AG Sbjct: 9 RFLPDRFTMMLVATVILASILPISGEPAVYFGLATKLAIALLFFLHGARLSRDVVIAGIL 68 Query: 94 HWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFTSVAR 153 HW+LH+ +LL TF LFPL+G+A + + LY+G+LFLCVLPSTVQSSIAFTS+A Sbjct: 69 HWRLHLVILLVTFGLFPLLGVAIGFIPESILPAPLYMGVLFLCVLPSTVQSSIAFTSMAG 128 Query: 154 GNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGAGHSSLDSILKIVYQLLLPFVAGQIA 213 GNVPAAIC+ASASN+ G+FLTPLLVG+L G SLD+ L+I QLLLPF+ GQ Sbjct: 129 GNVPAAICSASASNIFGMFLTPLLVGLLFTVGGHGGGFSLDAFLQIFLQLLLPFIIGQAL 188 Query: 214 RPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINAVLLA 273 +PWIG WI K L VD+ SIL+VVY+AFS+AV++G+WH + + +++IN VLLA Sbjct: 189 QPWIGEWIRARKKLLSPVDRGSILMVVYLAFSDAVIEGIWHTFSLRDIGVVILINIVLLA 248 Query: 274 LIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQ 333 +++ +T +GSR LGF K DEITI FCGSKKSLASGVPMA +F+ +IG ++LP+MLFHQ Sbjct: 249 IVLCVTMFGSRILGFDKADEITITFCGSKKSLASGVPMAGAIFAGQSIGAIVLPIMLFHQ 308 Query: 334 LQLMVCAVLAARYGARQE 351 +QLMVCAVLA RY + Sbjct: 309 IQLMVCAVLAQRYARKAH 326 >ZyfeH [R] COG0385 Predicted Na+-dependent transporter EcZ Escherichia coli O157:H7 EDL933 Length = 332 Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 185/328 (56%), Positives = 244/328 (74%), Gaps = 4/328 (1%) Query: 38 DNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVVAGFTHWKL 97 D TL L+ VV+ AS P G F+ LTT I LLFFMHGAKLSREA++AG HW+L Sbjct: 8 DPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRL 67 Query: 98 HVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFTSVARGNVP 157 H+ V+ TF LFP++G+ F + P LY G L+LC+LP+TVQS+IAFTS+A GNV Sbjct: 68 HLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGFLYLCILPATVQSAIAFTSMAGGNVA 127 Query: 158 AAICAASASNLLGIFLTPLLVGVLVVAHDGAGHSSLDSILKIVYQLLLPFVAGQIARPWI 217 AA+C+ASAS+LLGIFL+PLLVG+++ H G SL+ + KI+ QLLLPFV G ++RPWI Sbjct: 128 AAVCSASASSLLGIFLSPLLVGLVMNVHGAGG--SLEQVGKIMLQLLLPFVLGHLSRPWI 185 Query: 218 GRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINAVLLALIMA 277 G W+ RNK W+ DQ+SILLVVY AFSEAVV G+WH+V L+ ++V++ VLLA+++ Sbjct: 186 GDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAIVIV 245 Query: 278 LTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQLQLM 337 + + +RRLGF+K DEITIVFCGSKKSLA+G+PMA +LF + IGM++LP+M+FHQ+QLM Sbjct: 246 VNVFMARRLGFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQIQLM 305 Query: 338 VCAVLAARYGARQEEVEAAVASESGGDS 365 VCAVLA RY + E+++A ES D Sbjct: 306 VCAVLARRYKRQTEQLQA--QQESSADK 331 >ECs3282 [R] COG0385 Predicted Na+-dependent transporter Ecs Escherichia coli O157:H7 Length = 332 Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 185/328 (56%), Positives = 244/328 (74%), Gaps = 4/328 (1%) Query: 38 DNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVVAGFTHWKL 97 D TL L+ VV+ AS P G F+ LTT I LLFFMHGAKLSREA++AG HW+L Sbjct: 8 DPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRL 67 Query: 98 HVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFTSVARGNVP 157 H+ V+ TF LFP++G+ F + P LY G L+LC+LP+TVQS+IAFTS+A GNV Sbjct: 68 HLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGFLYLCILPATVQSAIAFTSMAGGNVA 127 Query: 158 AAICAASASNLLGIFLTPLLVGVLVVAHDGAGHSSLDSILKIVYQLLLPFVAGQIARPWI 217 AA+C+ASAS+LLGIFL+PLLVG+++ H G SL+ + KI+ QLLLPFV G ++RPWI Sbjct: 128 AAVCSASASSLLGIFLSPLLVGLVMNVHGAGG--SLEQVGKIMLQLLLPFVLGHLSRPWI 185 Query: 218 GRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINAVLLALIMA 277 G W+ RNK W+ DQ+SILLVVY AFSEAVV G+WH+V L+ ++V++ VLLA+++ Sbjct: 186 GDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAIVIV 245 Query: 278 LTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQLQLM 337 + + +RRLGF+K DEITIVFCGSKKSLA+G+PMA +LF + IGM++LP+M+FHQ+QLM Sbjct: 246 VNVFMARRLGFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQIQLM 305 Query: 338 VCAVLAARYGARQEEVEAAVASESGGDS 365 VCAVLA RY + E+++A ES D Sbjct: 306 VCAVLARRYKRQTEQLQA--QQESSADK 331