BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0395.p (343 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 322 1e-87 RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 236 8e-62 PA5158 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 218 2e-56 PA3894 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 201 2e-51 VC1409 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae 173 5e-43 >RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 489 Score = 322 bits (824), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 166/333 (49%), Positives = 230/333 (69%) Query: 1 VGYELDLWNKNQAALAQAISSEKAAQASEQEARLALTASIVTVYSQLAAQYALHDILQST 60 V Y+LD W KN+AAL A+S +KA +A Q +RL L+ S+ Y +LAA YA D+ + T Sbjct: 134 VSYDLDFWGKNRAALESALSDDKAMEAESQASRLMLSTSVARTYVKLAALYAQRDVAERT 193 Query: 61 VDQRTSLEKITAERLRTGLDSQIERDQSRTSSADARAQLAQSEGQIVLLRQQLGALAGKG 120 + QR L ++ +RLR GLD+Q+E Q+R + A A+ +L Q + QI L R QL AL GKG Sbjct: 194 IAQRRELVSLSGQRLRAGLDTQVETTQARANIAAAQTELEQVDEQIALARNQLAALLGKG 253 Query: 121 PDYGLQLAPPALQGLATPGLPAELPLNLMGRRPDIVAARWQVEAASRGVDVAKARFYPDI 180 PD GL +A P L TP LP L ++L+GRRPD+VAARW+VEA ++ +DVAKA+F PDI Sbjct: 254 PDRGLAIARPTLLAQPTPKLPDHLSIDLIGRRPDLVAARWRVEATAKDIDVAKAQFLPDI 313 Query: 181 NLSAMIGFDTLLDSNPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYASYELAVATYNK 240 +L+A +G ++ N ++ + GPA+ LPIFEGG LRA L+G+YA Y+ AVA+YN+ Sbjct: 314 SLTAFLGLASIAPENLLLGNARQLGIGPALRLPIFEGGKLRANLRGKYAGYDAAVASYNQ 373 Query: 241 TLNDAYADVARQIAAIHATERQLPIRSEALQAAERAYALARERYRLGLVSQLTLLSAQTG 300 TL +A D A QI ++H+ + Q+ I+ AL AERAY+LAR RY GL +QLT+L+A++ Sbjct: 374 TLTEALHDTADQITSLHSIDTQIDIQRTALAEAERAYSLARTRYGAGLGTQLTVLNAEST 433 Query: 301 VLAQRQAMVALQAQRRDQQVALYKALGGGFDAQ 333 VL QR+ LQA+R D Q+AL KALGGG+ A+ Sbjct: 434 VLQQRRLAALLQARRLDAQMALIKALGGGYTAE 466 >RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 475 Score = 236 bits (601), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 138/332 (41%), Positives = 202/332 (60%) Query: 3 YELDLWNKNQAALAQAISSEKAAQASEQEARLALTASIVTVYSQLAAQYALHDILQSTVD 62 +E+D W +N+A+LA A S +A++A +ARL L ++I + Y+ LA YA+ D ++ + Sbjct: 143 WEIDFWGRNRASLAAATSDLEASRADAAQARLTLASAIASSYADLAGLYAVRDADEAALA 202 Query: 63 QRTSLEKITAERLRTGLDSQIERDQSRTSSADARAQLAQSEGQIVLLRQQLGALAGKGPD 122 R ++ ER +GL+++ Q+ A A +L + + I L R L AL G GPD Sbjct: 203 VRRHSAQLFTERFASGLETRSGVKQAEALLASAEGELLRVDESIGLTRHALAALVGAGPD 262 Query: 123 YGLQLAPPALQGLATPGLPAELPLNLMGRRPDIVAARWQVEAASRGVDVAKARFYPDINL 182 GL + P++ + GLPAEL +NL+GRRPD+VAAR Q EA +D +A FYP++NL Sbjct: 263 RGLTIRRPSVAIRSPEGLPAELAVNLLGRRPDVVAARLQAEAQVHRIDSKRAEFYPNVNL 322 Query: 183 SAMIGFDTLLDSNPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYASYELAVATYNKTL 242 SA IGF+++ SN F + S+ + GPA++LPIF GG LR LK ASY+ AVA YN+TL Sbjct: 323 SAFIGFESIGLSNLFKSGSRIGSIGPAVSLPIFNGGRLRGELKRAQASYDEAVANYNRTL 382 Query: 243 NDAYADVARQIAAIHATERQLPIRSEALQAAERAYALARERYRLGLVSQLTLLSAQTGVL 302 A DVA + A +L EA +AAE+AY + RY GL S L +L+AQ +L Sbjct: 383 TQALQDVADAWLSRKALAPRLAKVEEAFRAAEQAYRVTLNRYEGGLASYLEVLTAQDTLL 442 Query: 303 AQRQAMVALQAQRRDQQVALYKALGGGFDAQR 334 ++A+ LQ++ VA+ +ALGGG+ A R Sbjct: 443 TNQRALTDLQSRAFTLDVAMTRALGGGYRAPR 474 >PA5158 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 492 Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/328 (40%), Positives = 190/328 (57%) Query: 3 YELDLWNKNQAALAQAISSEKAAQASEQEARLALTASIVTVYSQLAAQYALHDILQSTVD 62 Y+ DLW +AA A+ AA+ Q AR+ L+ASI YS LA + + D+ + + Sbjct: 148 YDFDLWGGERAAWEAALGQANAARIDSQAARIGLSASIARAYSDLAHAFTVRDLAEEELK 207 Query: 63 QRTSLEKITAERLRTGLDSQIERDQSRTSSADARAQLAQSEGQIVLLRQQLGALAGKGPD 122 + + +++ +R+ GLDS+++ Q++T A AR QL+ +E I R L L GKGPD Sbjct: 208 RSQRMTELSQKRMSAGLDSKVQLQQTQTQLATARQQLSAAEQDIASARIALAVLLGKGPD 267 Query: 123 YGLQLAPPALQGLATPGLPAELPLNLMGRRPDIVAARWQVEAASRGVDVAKARFYPDINL 182 GL+L P A+ LP+ LP L+GRR DIVAARW+VEAA R +D AK FYP++NL Sbjct: 268 RGLELQRPQPLNPASLSLPSVLPAELLGRRADIVAARWRVEAARRNIDSAKTEFYPNLNL 327 Query: 183 SAMIGFDTLLDSNPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYASYELAVATYNKTL 242 AM G L S+ A S+ PAI+LPIF+GG RA L A Y+LAV YNKTL Sbjct: 328 GAMAGLAALHTSDVLQAPSRFFQVAPAISLPIFDGGRRRANLAERDADYDLAVGQYNKTL 387 Query: 243 NDAYADVARQIAAIHATERQLPIRSEALQAAERAYALARERYRLGLVSQLTLLSAQTGVL 302 A +V+ + + + E+Q+ + +A A + LA RY G+ S L LS Q +L Sbjct: 388 VQALGEVSDDLGKLRSLEQQVIDQRQARDIARSNFDLAMRRYGEGVGSYLDALSVQQQLL 447 Query: 303 AQRQAMVALQAQRRDQQVALYKALGGGF 330 + + +L++Q+ D V L +ALGGGF Sbjct: 448 VAERQLASLESQQIDLSVQLVQALGGGF 475 >PA3894 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 496 Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 179/301 (59%), Gaps = 2/301 (0%) Query: 1 VGYELDLWNKNQAALAQAISSEKAAQASEQEARLALTASIVTVYSQLAAQYALHDILQST 60 + Y+LDLW ++++ +A+ A A ++A+L L +IV Y QL+ QYA DI ++ Sbjct: 140 LNYKLDLWGRDRSDSERAVDLAHMAAAEARQAQLELEGNIVRAYVQLSLQYAEMDIAKAM 199 Query: 61 VDQRTSLEKITAERLRTGLDSQIERDQSRTSSADARAQLAQSEGQIVLLRQQLGALAGKG 120 + Q+ + + RLR G+ + E Q+ + ++ + +I L R L ALAGKG Sbjct: 200 LQQQRDILALAQRRLRGGIGTHFEVSQAEVPLPETERRIEVIDEEIQLTRNLLAALAGKG 259 Query: 121 PDYGLQLAPPALQGLATPGLPAELPLNLMGRRPDIVAARWQVEAASRGVDVAKARFYPDI 180 P G + P+L A P LP+ LP L+GRRPD+VA RWQV A ++GVDVA+A FYP++ Sbjct: 260 PGEGRTIRRPSLNLAAQPSLPSALPAELLGRRPDVVARRWQVAALAKGVDVARADFYPNV 319 Query: 181 NLSAMIGFDTLLDS--NPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYASYELAVATY 238 +L A +GF + F +A + + GPA+TLPIF+GG LR+ L A Y+ AV Y Sbjct: 320 DLMASVGFSAVGGGMLEFFRSAKYTYSAGPAVTLPIFDGGRLRSQLGEAAAGYDAAVEQY 379 Query: 239 NKTLNDAYADVARQIAAIHATERQLPIRSEALQAAERAYALARERYRLGLVSQLTLLSAQ 298 N+TL DA +++ Q+ +H+ + Q ++++ +A++ Y +A Y+ GL L +L+AQ Sbjct: 380 NQTLVDALKNISDQLIRLHSVDIQKDFAAQSVASAQKTYDIATLAYQRGLTDYLNVLNAQ 439 Query: 299 T 299 T Sbjct: 440 T 440 >VC1409 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae Length = 484 Score = 173 bits (439), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 186/329 (56%) Query: 3 YELDLWNKNQAALAQAISSEKAAQASEQEARLALTASIVTVYSQLAAQYALHDILQSTVD 62 Y+ D W KN+AA+ A S AA+A ARL ++ SI Y++LA YA + + + + Sbjct: 152 YDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQ 211 Query: 63 QRTSLEKITAERLRTGLDSQIERDQSRTSSADARAQLAQSEGQIVLLRQQLGALAGKGPD 122 R ++ +R GL++ Q++ +A A+L + I L + L AL G+GPD Sbjct: 212 VRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQKNALAALVGQGPD 271 Query: 123 YGLQLAPPALQGLATPGLPAELPLNLMGRRPDIVAARWQVEAASRGVDVAKARFYPDINL 182 + P + + GLP+E + L+G R DI AARW+ EAA++ V +A+A+FYPD+ L Sbjct: 272 RAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEAAAQQVGIAQAQFYPDVTL 331 Query: 183 SAMIGFDTLLDSNPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYASYELAVATYNKTL 242 SA IG+ + F + + + A GPAI LP+F GG L L A Y+ AVA YN TL Sbjct: 332 SAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLFTGGRLEGQLTSAEARYQEAVAQYNGTL 391 Query: 243 NDAYADVARQIAAIHATERQLPIRSEALQAAERAYALARERYRLGLVSQLTLLSAQTGVL 302 A +VA + + A + ++ +A+Q AE+A +A RY+ GL + L +L A+ +L Sbjct: 392 VQALYEVADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLATYLDVLVAEESLL 451 Query: 303 AQRQAMVALQAQRRDQQVALYKALGGGFD 331 ++A+V LQ++ +AL ALGGGF+ Sbjct: 452 NNQRALVNLQSRAFSLDLALIHALGGGFE 480