BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0385.p         (184 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2983 [K] COG1595 DNA-directed RNA polymerase specialized sigm...   124   1e-28
mlr7773 [K] COG1595 DNA-directed RNA polymerase specialized sigm...   120   1e-27
SMc01506 [K] COG1595 DNA-directed RNA polymerase specialized sig...   117   2e-26
AGc2739 [K] COG1595 DNA-directed RNA polymerase specialized sigm...   117   2e-26
BMEI0371 [K] COG1595 DNA-directed RNA polymerase specialized sig...   109   3e-24

>RSc2983 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit,
           sigma24 homolog Rso Ralstonia solanacearum
          Length = 177

 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/174 (46%), Positives = 104/174 (59%), Gaps = 15/174 (8%)

Query: 22  MLACLPRLRRYARALTGAREAADDLVQDTLERAWQ---------KLDSWQRGSPMRPWLF 72
           ++A  PRLRR+AR L G    ADDLVQDTLERAW+         +L +   G  +  WL 
Sbjct: 8   LIALTPRLRRHARGLVGDAARADDLVQDTLERAWRYRWRFQLRPRLGAAGEGDGLFAWLL 67

Query: 73  SIMHNLHADARRRASPATVALDEFGEIDQVQAALDPGVLLDLETALQLLPPEQREVLLLV 132
           +IMH LH +A RR  P  + L +      +  + DPG+  DL  AL  LP +QR VLLLV
Sbjct: 68  TIMHRLHLNAVRR--PDRLELTDAPP--DIPVSDDPGLRRDLLQALASLPDDQRAVLLLV 123

Query: 133 VLEEMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESS--PGSSLKVVK 184
            LE++ Y E A  LG+P GTVMSRLSRARER+R  + G   +S   G++L  VK
Sbjct: 124 GLEQLAYREAADVLGVPLGTVMSRLSRARERMRVALDGAPATSGDSGTTLHRVK 177


>mlr7773 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit,
           sigma24 homolog Mlo Mesorhizobium loti
          Length = 205

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 4/152 (2%)

Query: 21  AMLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLHA 80
           A+L  +PRLRRYAR+L   R++ADDLVQD LERA  +LD+WQ G   R WLF+IMH+L  
Sbjct: 40  AILGEIPRLRRYARSLLRDRDSADDLVQDCLERALMRLDNWQTGESPRRWLFTIMHHLFI 99

Query: 81  D----ARRRASPATVALDEFGEIDQVQAALDPGVLLDLETALQLLPPEQREVLLLVVLEE 136
           D      RR   A + L+    + Q    L+     ++  ALQ + P++R  L++V +E 
Sbjct: 100 DQMRKVNRRGEAAMLPLEAGEAVAQPAEQLEGIASREIIHALQAISPDRRAALVMVAIEG 159

Query: 137 MRYEEVAVTLGIPTGTVMSRLSRARERLRRVM 168
             Y E A  LG+P GT+MSR++R RE LR ++
Sbjct: 160 FSYAEAANMLGVPAGTLMSRIARGREELRGLL 191


>SMc01506 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit,
           sigma24 homolog Sme Sinorhizobium meliloti
          Length = 184

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 101/172 (58%), Gaps = 14/172 (8%)

Query: 14  ERQADEQAMLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFS 73
           E Q  ++ MLA LP LR +A +L G  + ADDLVQDT+ +AW K D ++ G+ M+ WLF+
Sbjct: 4   ENQEFKREMLAALPSLRAFAMSLIGRHDRADDLVQDTIMKAWAKQDHFEIGTNMKAWLFT 63

Query: 74  IMHN-LHADARRRASPATVALDEFGEIDQVQA-------ALDPGVLLDLETALQLLPPEQ 125
           I+ N L++  R+R        D  G + +  A       +LD   L D   AL+ LPP+Q
Sbjct: 64  ILRNELYSQMRKRGREVQ---DSDGHLTETLAHHPEQYGSLD---LQDFRRALEQLPPDQ 117

Query: 126 REVLLLVVLEEMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPG 177
           RE ++LV      YEE A   G   GT+ SR++RAR+RL+ ++Q +GE+  G
Sbjct: 118 REAIILVGASGFSYEEAATICGCALGTIKSRVNRARQRLQEILQVRGENDYG 169


>AGc2739 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit,
           sigma24 homolog Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 177

 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 101/166 (60%), Gaps = 8/166 (4%)

Query: 22  MLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLHAD 81
           M +C+P LRRYA ALT  R+ ADDLVQD LERA +K   W+   P+RPWL+ ++ N++ +
Sbjct: 17  MTSCIPALRRYANALTHDRDTADDLVQDCLERAIRKKALWRPQGPLRPWLYRVLVNVYRN 76

Query: 82  ARRRAS--PATVALDEFGEIDQVQAALDPGV-LLDLETALQLLPPEQREVLLLVVLEEMR 138
             R +   P  + +D+  E   V AA    V L ++  A++ L  E RE LLLVV+E + 
Sbjct: 77  NLRGSKRRPQQIPIDDVTEQLVVPAAQTGRVALAEMARAIEKLSGEHRETLLLVVVEGLT 136

Query: 139 YEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184
           Y E A  L IP GT+MSRL RAR  L R+ Q   E  P  +LKV+K
Sbjct: 137 YAEAANILEIPLGTLMSRLGRARTALARMTQ---EDQP--NLKVIK 177


>BMEI0371 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit,
           sigma24 homolog Bme Brucella melitensis
          Length = 190

 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 10/162 (6%)

Query: 22  MLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHN-LHA 80
           +LA LP LR +A +L G  + ADDLVQDT+ +AW K +S++ G+ M+ WLF+I+ N  + 
Sbjct: 19  LLASLPSLRAFAVSLIGQHDRADDLVQDTIMKAWAKQESFEVGTNMKAWLFTILRNEFYT 78

Query: 81  DARRRASPATVALDEFGEIDQVQAALDPGV-----LLDLETALQLLPPEQREVLLLVVLE 135
             R+R          F E    Q A+ P       L D   AL  LP +QRE ++L+   
Sbjct: 79  QMRKRGREVQDTDGMFSE----QLAVHPSQYGTLDLQDFRAALDQLPDDQREAIILIGAS 134

Query: 136 EMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPG 177
              YEE A   G   GT+ SR+SRAR RL+ ++Q +GE+  G
Sbjct: 135 GFAYEEAAEICGCAVGTIKSRVSRARARLQEILQIEGEADYG 176