BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0360.p (283 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3022 [R] COG3217 Uncharacterized Fe-S protein Pae Pseudomonas ... 174 3e-43 VCA0924_1 [R] COG3217 Uncharacterized Fe-S protein Vch Vibrio ch... 159 5e-39 YPO1417_1 [R] COG3217 Uncharacterized Fe-S protein Ype Yersinia ... 150 3e-36 Z1297_1 [R] COG3217 Uncharacterized Fe-S protein EcZ Escherichia... 147 3e-35 ECs1031_1 [R] COG3217 Uncharacterized Fe-S protein Ecs Escherich... 146 4e-35 >PA3022 [R] COG3217 Uncharacterized Fe-S protein Pae Pseudomonas aeruginosa Length = 268 Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 121/280 (43%), Positives = 153/280 (54%), Gaps = 17/280 (6%) Query: 1 MSILSAIHLYPVKSCAGLSLTRTRIGPLGLALDRHWMLVDRQ-GRFLTQRQHPEMACITP 59 M LSA++ YP+KS A SL R + LG+ DR WM VD + GRF TQR P++ I Sbjct: 1 MFRLSALYRYPIKSSAAESLERVALDALGVVGDRRWMAVDTETGRFFTQRLLPQLGRIQA 60 Query: 60 AFEG-ERLVLRAPGMPALSLSMQGEDGEALPVQVWNSHLDALDQGQTAAQWCSDYLGEAV 118 + E L L APGM LSL + D V VW L A D G AA W + +LG Sbjct: 61 RWAAPEVLRLNAPGMSELSLEVPAADANLRGVTVWRDTLQAPDAGDAAADWLTRFLGRPT 120 Query: 119 RLVRFNPAASRPCSTRWTEGRQAYTQFSDGYPLLVIGQASLEDLNARLTAKGXKGAPALG 178 RLV A +R T + E Q F+DG+PLL+IGQASL+DL+ R+ G P L Sbjct: 121 RLVHIPEARARQVDTGYAEPGQK-VHFADGFPLLLIGQASLDDLSQRV------GRP-LE 172 Query: 179 MERFRPNLVISGLEAYDEDHISTLTLGQVELRLVKPCARCPIPGIDQRTGLRDARWPDEP 238 M RFRPNLV+ G A+ ED + +G VE + KPC+RC + +D TG R+ EP Sbjct: 173 MLRFRPNLVVEGSAAFAEDGWKRIRIGSVEFVVAKPCSRCILTTLDPATGERNE--DREP 230 Query: 239 LDTLAGYRADPRVDGGLTFGQNAIVTGGEGGVIEVGQAVQ 278 L TL YR DG + FGQN I G G +EVG V+ Sbjct: 231 LTTLKTYREK---DGAVLFGQNLIALG--QGSLEVGMPVE 265 >VCA0924_1 [R] COG3217 Uncharacterized Fe-S protein Vch Vibrio cholerae Length = 337 Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 3 ILSAIHLYPVKSCAGLSLTRTRIGPLGLALDRHWMLVDRQGRFLTQRQHPEMACITPAFE 62 +LS I+++PVKS GL+L+ + GL DR +ML G +T R+ P+M I A Sbjct: 62 LLSQINVFPVKSLGGLALSSAWVEKQGLTFDRRFMLALSDGSMVTARKFPQMVLIKTALR 121 Query: 63 GERLVLRAPGMPALSLSMQGEDGEALPVQVWNSHLDALDQGQTAAQWCSDYLGEAVRLVR 122 + ++ A G P+L++ + +P QVW+ + A A W S LG V L+ Sbjct: 122 HDGVLFSAQGHPSLTIRYADFKFQPVPAQVWSDNFTAYTTTDEADDWFSQVLGIRVELL- 180 Query: 123 FNPAASRPCSTRWTEGRQAYTQFSDGYPLLVIGQASLEDLNARLTAKGXKGAPAL-GMER 181 S S R E F+DGYPLLVI QASL++LN R +P M++ Sbjct: 181 ----YSGEQSNRVREKVGHNVSFADGYPLLVISQASLDELNRR--------SPEFHSMDQ 228 Query: 182 FRPNLVISGLEAYDEDHISTLTLGQVELRLVKPCARCPIPGIDQRTGLRDARWPDEPLDT 241 FR NLV+SG E + ED + +G+VE VKPC RC + ++ + G R EPL T Sbjct: 229 FRTNLVVSGTEPFAEDSWKRIRIGEVEFEAVKPCERCILTTVEVKKGA--FRPTKEPLRT 286 Query: 242 LAGYRADPRVDGGLTFGQNAIVTGGEGGVIEVGQAVQ 278 L+ +RA+ R GG+ FGQN + G+I G ++ Sbjct: 287 LSQFRANER--GGVFFGQNLV--AKNEGMIRAGDPIE 319 >YPO1417_1 [R] COG3217 Uncharacterized Fe-S protein Ype Yersinia pestis Length = 273 Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 138/275 (50%), Gaps = 17/275 (6%) Query: 4 LSAIHLYPVKSCAGLSLTRTRIGPLGLALDRHWMLVDRQGRFLTQRQHPEMACITPAFEG 63 LS ++++PVKS GL L+ ++ GLA DR +M+ + G F+T RQ+P+M TPA Sbjct: 5 LSRLYVHPVKSMRGLQLSHAQVSRSGLAFDRVFMITEPDGMFITARQYPKMVMFTPALMA 64 Query: 64 ERLVLRAPGMPALSLSMQGEDGEALPVQVWNSHLDALDQGQTAAQWCSDYLGEAVRLVRF 123 + L L AP + S+ P +VW +H AL + W S Y V+L Sbjct: 65 DGLYLTAPDGESASIRFNDFLANPAPTEVWGNHFTALIAPEAINSWLSGYFQRDVQLRWV 124 Query: 124 NPAASRPCSTRWTEGRQAYTQFSDGYPLLVIGQASLEDLNARLTAKGXKGAPALGMERFR 183 +R R + F+DG+P L+I +AS +DL R A ++ +E+FR Sbjct: 125 GTELTR----RVKPLPEVPLSFADGFPYLLINEASFKDLQQRCPA-------SIKLEQFR 173 Query: 184 PNLVISGLEAYDEDHISTLTLGQVELRLVKPCARCPIPGIDQRTGLRDARWPDEPLDTLA 243 PNLVI+G A+ ED + +G + LVKPC+RC + + G + EPL TL Sbjct: 174 PNLVITGTTAFAEDCWQVIRIGDITFDLVKPCSRCVLTTVSVERGQKHP--AGEPLRTLQ 231 Query: 244 GYRADPRVDGGLTFGQNAIVTGGEGGVIEVGQAVQ 278 +R +G + FGQN + G+I VG V+ Sbjct: 232 TFRTAE--NGDVDFGQNMV--ARNSGIIRVGDEVE 262 >Z1297_1 [R] COG3217 Uncharacterized Fe-S protein EcZ Escherichia coli O157:H7 EDL933 Length = 273 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 16/278 (5%) Query: 1 MSILSAIHLYPVKSCAGLSLTRTRIGPLGLALDRHWMLVDRQGRFLTQRQHPEMACITPA 60 M+ L+ + ++PVKS G+ LT GLA DR +M+ + G F+T RQ P+M TP+ Sbjct: 1 MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS 60 Query: 61 FEGERLVLRAPGMPALSLSMQGEDGEALPVQVWNSHLDALDQGQTAAQWCSDYLGEAVRL 120 + L L AP + + + P +VW +H A + +W S + V+L Sbjct: 61 PVHDGLHLTAPDSSSAYVRFADFATQDAPTEVWGTHFTARIAPEAINKWLSGFFSREVQL 120 Query: 121 VRFNPAASRPCSTRWTEGRQAYTQFSDGYPLLVIGQASLEDLNARLTAKGXKGAPALGME 180 P +R R F+DGYP L+ +ASL DL R A ++ ME Sbjct: 121 RWVGPQMTR----RVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPA-------SVKME 169 Query: 181 RFRPNLVISGLEAYDEDHISTLTLGQVELRLVKPCARCPIPGIDQRTGLRDARWPDEPLD 240 +FRPNLV+SG A++ED + +G V +VKPC+RC + G + EPL Sbjct: 170 QFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHP--AGEPLK 227 Query: 241 TLAGYRADPRVDGGLTFGQNAIVTGGEGGVIEVGQAVQ 278 TL +R + +G + FGQN I GVI VG V+ Sbjct: 228 TLQSFRT-AQDNGDVDFGQNLI--ARNSGVIRVGDEVE 262 >ECs1031_1 [R] COG3217 Uncharacterized Fe-S protein Ecs Escherichia coli O157:H7 Length = 267 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 16/278 (5%) Query: 1 MSILSAIHLYPVKSCAGLSLTRTRIGPLGLALDRHWMLVDRQGRFLTQRQHPEMACITPA 60 M+ L+ + ++PVKS G+ LT GLA DR +M+ + G F+T RQ P+M TP+ Sbjct: 1 MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS 60 Query: 61 FEGERLVLRAPGMPALSLSMQGEDGEALPVQVWNSHLDALDQGQTAAQWCSDYLGEAVRL 120 + L L AP + + + P +VW +H A + +W S + V+L Sbjct: 61 PVHDGLHLTAPDSSSAYVRFADFATQDAPTEVWGTHFTARIAPEAINKWLSGFFSREVQL 120 Query: 121 VRFNPAASRPCSTRWTEGRQAYTQFSDGYPLLVIGQASLEDLNARLTAKGXKGAPALGME 180 P +R R F+DGYP L+ +ASL DL R A ++ ME Sbjct: 121 RWVGPQMTR----RVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPA-------SVKME 169 Query: 181 RFRPNLVISGLEAYDEDHISTLTLGQVELRLVKPCARCPIPGIDQRTGLRDARWPDEPLD 240 +FRPNLV+SG A++ED + +G V +VKPC+RC + G + EPL Sbjct: 170 QFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHP--AGEPLK 227 Query: 241 TLAGYRADPRVDGGLTFGQNAIVTGGEGGVIEVGQAVQ 278 TL +R + +G + FGQN I GVI VG V+ Sbjct: 228 TLQSFRT-AQDNGDVDFGQNLI--ARNSGVIRVGDEVE 262