BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0275.p (182 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0040 [TK] COG4567 Response regulator consisting of a CheY-lik... 234 6e-62 PA4493 [TK] COG4567 Response regulator consisting of a CheY-like... 177 1e-44 XF2578 [TK] COG4567 Response regulator consisting of a CheY-like... 155 7e-38 mlr5308 [TK] COG4567 Response regulator consisting of a CheY-lik... 147 2e-35 BMEI1811 [TK] COG4567 Response regulator consisting of a CheY-li... 142 5e-34 >RSc0040 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Rso Ralstonia solanacearum Length = 192 Score = 234 bits (598), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 125/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVL+EH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLSEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >PA4493 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Pae Pseudomonas aeruginosa Length = 186 Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/179 (53%), Positives = 127/179 (70%), Gaps = 8/179 (4%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQW 64 L++DD+ F LAR+++RRG R + A S E L A+++ DYA +DL++E DSGL Sbjct: 15 LLLVDDDPTFTRVLARAMSRRGLRVSTAGSAEEGLALAQQDTPDYAVLDLKMEGDSGLVL 74 Query: 65 VSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSA-LSHSGDGEQA 123 + L + R+++LTGY+SIAT V+AIK GA NYL KPA+ D +L+A LS D Sbjct: 75 LPKLLELHADMRVVILTGYSSIATAVEAIKRGACNYLCKPADADDVLAALLSEHAD---- 130 Query: 124 AETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPVAR 182 +T +P +P+S++RL+WEHIQRVLAEHEGNIS+TARAL MHRRTLQRKL KRPV R Sbjct: 131 LDTLVP---ENPMSVDRLQWEHIQRVLAEHEGNISATARALGMHRRTLQRKLQKRPVRR 186 >XF2578 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Xfa Xylella fastidiosa 9a5c Length = 192 Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 88/178 (49%), Positives = 114/178 (64%), Gaps = 9/178 (5%) Query: 6 LILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQWV 65 L++DD+ ++ TL RSL RRG A +AL AAR +A +DL+L +DSGL + Sbjct: 10 LLVDDDTLYLRTLQRSLGRRGVDTVTATDTVSALTAARSMLPSFALLDLKLGQDSGLALI 69 Query: 66 SPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQAAE 125 LR R+L++TGYASIAT V+AIK GAD YL KPAN+++IL A+S E A Sbjct: 70 QELRAIRSDMRILLVTGYASIATAVEAIKRGADEYLPKPANINTILRAIS-----EDTAN 124 Query: 126 TPLPVEEASPL----SLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRP 179 P ++ S L L RL+WEHIQ+ L E +GNIS+ AR L MHRR+LQRKL KRP Sbjct: 125 GLTPDKDESALHTMTPLSRLQWEHIQQALHETDGNISAAARLLGMHRRSLQRKLTKRP 182 >mlr5308 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Mlo Mesorhizobium loti Length = 187 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 7/175 (4%) Query: 4 AFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQ 63 + LI+DD+ F LAR++ RGF A S E A+ AR YA +D++L +GL Sbjct: 17 SLLIVDDDKPFLTRLARAMETRGFVVETAESVEEAVGKARANPPAYAVVDMRLGDGNGLD 76 Query: 64 WVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQA 123 V+ +R+ +R ++LTGY +IAT V A+K GA +YL+KPA+ D I +AL+ + GE+A Sbjct: 77 VVAAIREKREDSRTIILTGYGNIATAVTAVKLGAVDYLSKPADADDIFAALTRTS-GERA 135 Query: 124 AETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 A P E +P+S +R+ WEHIQRV E N+S TAR LNMHRRTLQR LAKR Sbjct: 136 A----PPE--NPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKR 184 >BMEI1811 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Bme Brucella melitensis Length = 187 Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 108/174 (62%), Gaps = 7/174 (4%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQW 64 L++DD+ F LAR++ RGF+ T A S E + A + YA +D++L +GL Sbjct: 18 LLLVDDDKPFLQRLARAMESRGFQVTTAESVEEGIAAVKTSAPAYAVVDMRLGDGNGLNI 77 Query: 65 VSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQAA 124 + +R R +VLTGY +IAT V A+K GA +YL+KPA+ D + +AL+ GE+ A Sbjct: 78 IEAIRSRRADTRAIVLTGYGNIATAVNAVKLGAIDYLSKPADADEVFAALTRR-PGEKVA 136 Query: 125 ETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 P E +P+S +R+ WEHIQRV E N+S TAR LNMHRRTLQR LAKR Sbjct: 137 ----PPE--NPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKR 184