BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0259.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1711 [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 354 6e-98 VC1922 [OU] COG0740 Protease subunit of ATP-dependent Clp protea... 308 7e-84 XF1187 [OU] COG0740 Protease subunit of ATP-dependent Clp protea... 305 3e-83 STM0448 [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 301 5e-82 BH3564 [OU] COG0740 Protease subunit of ATP-dependent Clp protea... 301 5e-82 >RSc1711 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Rso Ralstonia solanacearum Length = 217 Score = 354 bits (909), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 168/201 (83%), Positives = 188/201 (93%) Query: 8 SALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLES 67 SAL+TQ LG+VPMV+EQSGRGERAYDIYSRLLKER+IF+VG VND ANL+VAQLLFLES Sbjct: 16 SALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLES 75 Query: 68 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRF 127 ENPDKDISLYINSPGGSVSAG+A++DTMQF+KP VSTLC G+AASMGAFLLAAGAKGKR+ Sbjct: 76 ENPDKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRY 135 Query: 128 SLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDN 187 +LPNSRIMIHQPLGGA+GQASDIEIQAREILYLRERLNTIL+E TG+ V++I++DTDRDN Sbjct: 136 ALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDN 195 Query: 188 FMSADAAAEYGLIDKVLTERG 208 FMS D A EYGLIDKVL RG Sbjct: 196 FMSGDQAKEYGLIDKVLARRG 216 >VC1922 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Vch Vibrio cholerae Length = 200 Score = 308 bits (788), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 143/192 (74%), Positives = 165/192 (85%) Query: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISL 76 +VPMV+EQ+ RGER+YDIYSRLLKER+IFL G V D MANL+VAQLLFLESENPDKDI L Sbjct: 8 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 67 Query: 77 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 136 YINSPGGSV+AGM+I+DTMQFIKP VST+C G A SMGAFLLA GA GKR+ LPNSR+MI Sbjct: 68 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 127 Query: 137 HQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDNFMSADAAAE 196 HQPLGG QGQASDI+I A+EIL ++ +LN +LAE TG+ +E I +DTDRDNFMSAD A E Sbjct: 128 HQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVE 187 Query: 197 YGLIDKVLTERG 208 YGL+D VL RG Sbjct: 188 YGLVDAVLKHRG 199 >XF1187 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Xfa Xylella fastidiosa 9a5c Length = 208 Score = 305 bits (782), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 142/196 (72%), Positives = 172/196 (87%) Query: 12 TQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPD 71 T+ L +VPMV+EQ+ RGERAYDIYSRLLKER+IFLVGP++D MANLIVAQLLFLE+ENP+ Sbjct: 5 TKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPE 64 Query: 72 KDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPN 131 KDI++YINSPGG V+AGMAI+DTMQ+IKP VST+C G AASMGA LLA+GA GKR++LPN Sbjct: 65 KDINIYINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPN 124 Query: 132 SRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDNFMSA 191 SR+MIHQPLGG QGQA+DI+I AREIL LR RLN ILA+ TG+++E I+ DT+RDNF SA Sbjct: 125 SRVMIHQPLGGFQGQATDIDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNFKSA 184 Query: 192 DAAAEYGLIDKVLTER 207 A YGL+D+VL +R Sbjct: 185 VDAQAYGLVDQVLGQR 200 >STM0448 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Sty Salmonella typhimurium LT2 Length = 207 Score = 301 bits (772), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 137/193 (70%), Positives = 166/193 (86%) Query: 15 LGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDI 74 + +VPMVIEQ+ RGER++DIYSRLLKER+IFL G V D MANLIVAQ+LFLE+ENP+KDI Sbjct: 14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 73 Query: 75 SLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRI 134 LYINSPGG ++AGM+I+DTMQFIKP VST+C G AASMGAFLL AGAKGKRF LPNSR+ Sbjct: 74 YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 133 Query: 135 MIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDNFMSADAA 194 MIHQPLGG QGQA+DIEI AREIL ++ R+N ++A TG+++EQI +DT+RD F+SA A Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193 Query: 195 AEYGLIDKVLTER 207 EYGL+D +LT R Sbjct: 194 VEYGLVDSILTHR 206 >BH3564 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Bha Bacillus halodurans Length = 194 Score = 301 bits (772), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 140/190 (73%), Positives = 168/190 (88%) Query: 15 LGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDI 74 + ++P VIEQ+ RGERAYDIYSRLLK+RII L ++D +AN IVAQLLFL++E+PDKDI Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDI 60 Query: 75 SLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRI 134 SLYINSPGGS++AGMAI+DTMQ+IKP VST+C G+AASMGAFLLAAGAKGKRF+LPNS + Sbjct: 61 SLYINSPGGSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120 Query: 135 MIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDNFMSADAA 194 MIHQPLGG +GQASDIEI R IL +RE LN ILAE+TG+ +EQI+KDTDRDNFM+A+ A Sbjct: 121 MIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKA 180 Query: 195 AEYGLIDKVL 204 EYGLIDKV+ Sbjct: 181 REYGLIDKVI 190