BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0256.p         (77 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1714 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso R...    97   1e-20
STM0451 [L] COG0776 Bacterial nucleoid DNA-binding protein Sty S...    90   1e-18
VC1919 [L] COG0776 Bacterial nucleoid DNA-binding protein Vch Vi...    90   1e-18
hupB [L] COG0776 Bacterial nucleoid DNA-binding protein Eco Esch...    89   3e-18
ZhupB [L] COG0776 Bacterial nucleoid DNA-binding protein EcZ Esc...    89   3e-18

>RSc1714 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso Ralstonia
          solanacearum
          Length = 90

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query: 1  VNKGELIEHIAGEADLSKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARTG 60
          +NK +LI+H+A + D+SKAAAGRA+DA IG +K  L   G+VTLVGFGTF VG+R+AR G
Sbjct: 1  MNKTDLIDHVAAQTDMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARAG 60

Query: 61 RNPQTGAAIK 70
          RNP+TGA IK
Sbjct: 61 RNPRTGATIK 70


>STM0451 [L] COG0776 Bacterial nucleoid DNA-binding protein Sty Salmonella
          typhimurium LT2
          Length = 90

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 1  VNKGELIEHIAGEADLSKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARTG 60
          +NK +LIE IA  AD+SKAAAGRA+DA I +V  +LK+   V LVGFGTFAV +RAARTG
Sbjct: 1  MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 61 RNPQTGAAI 69
          RNPQTG  I
Sbjct: 61 RNPQTGKEI 69


>VC1919 [L] COG0776 Bacterial nucleoid DNA-binding protein Vch Vibrio
          cholerae
          Length = 90

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 54/70 (77%)

Query: 1  VNKGELIEHIAGEADLSKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARTG 60
          +NK +L+E IA  AD+SKA+AGRA+DAFI AV  TL+    V LVGFGTF+V  RAARTG
Sbjct: 1  MNKTQLVEQIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 61 RNPQTGAAIK 70
          RNP+TG  IK
Sbjct: 61 RNPKTGEEIK 70


>hupB [L] COG0776 Bacterial nucleoid DNA-binding protein Eco
          Escherichia coli K12
          Length = 90

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 54/69 (78%)

Query: 1  VNKGELIEHIAGEADLSKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARTG 60
          +NK +LI+ IA  AD+SKAAAGRA+DA I +V  +LK+   V LVGFGTFAV +RAARTG
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 61 RNPQTGAAI 69
          RNPQTG  I
Sbjct: 61 RNPQTGKEI 69


>ZhupB [L] COG0776 Bacterial nucleoid DNA-binding protein EcZ
          Escherichia coli O157:H7 EDL933
          Length = 90

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 54/69 (78%)

Query: 1  VNKGELIEHIAGEADLSKAAAGRAVDAFIGAVKTTLKKNGTVTLVGFGTFAVGKRAARTG 60
          +NK +LI+ IA  AD+SKAAAGRA+DA I +V  +LK+   V LVGFGTFAV +RAARTG
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 61 RNPQTGAAI 69
          RNPQTG  I
Sbjct: 61 RNPQTGKEI 69