BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0248.p (211 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2312 [TK] COG2197 Response regulator containing a CheY-like r... 166 4e-41 YPO0255 [TK] COG2197 Response regulator containing a CheY-like r... 151 9e-37 VC1277 [TK] COG2197 Response regulator containing a CheY-like re... 150 2e-36 all4635 [TK] COG2197 Response regulator containing a CheY-like r... 149 5e-36 BS_yvqC [TK] COG2197 Response regulator containing a CheY-like r... 145 4e-35 >RSc2312 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 238 Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 138/212 (65%), Gaps = 4/212 (1%) Query: 1 MLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNGLE 60 ++A+DH L+R G++++L+A+ +VVGEA DG E ++ L PDLVL D++M GMNG++ Sbjct: 8 LIAEDHHLLRCGLRSMLSALGEYDVVGEAKDGREACQLAISLAPDLVLTDLSMPGMNGID 67 Query: 61 ALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGRQY 120 + ++ P IR ++L++Y SEEYV +AL G +GY+ KD++ EL AL V G+++ Sbjct: 68 MVATIKRRLPQIRVVVLTVYKSEEYVREALRVGVDGYVLKDASFEELVAALRAVMQGKRH 127 Query: 121 LDSHISREALDNYM---KRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKT 177 L + + + +++ + +A T E LT R+R +LQL+AEG +++ LN+S KT Sbjct: 128 LSADVYGNVVKSFVNGHEALAPKST-WETLTARERSVLQLVAEGRTNRQVGLYLNLSPKT 186 Query: 178 IETHRAQLMERLDIRDVPGLVRYAIRTGIATP 209 IE +RA LME+L + +V GLV AI G+ P Sbjct: 187 IEKYRAHLMEKLGVGNVTGLVLAAIGLGLIAP 218 >YPO0255 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ype Yersinia pestis Length = 210 Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 129/209 (61%), Gaps = 9/209 (4%) Query: 1 MLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNGLE 60 ++ DDH L+ GIK +L A P +VG+A +G EV + Q +PD+V+LD+ + GM+GL+ Sbjct: 6 LIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPGMDGLD 65 Query: 61 ALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGRQY 120 + +L +P ++ L L+ E Y + N+GA GY+ K S L A+ V G++Y Sbjct: 66 VIIQLLRRWPALKILTLTARNEEHYASRTFNSGALGYVLKKSPQQILMAAIQTVAIGKRY 125 Query: 121 LDSHISREALDNYMK-RVAQ--NGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKT 177 +D ALD M ++ Q + TP VLTPR+R+IL+LI EG+ + IA QL++S KT Sbjct: 126 IDP-----ALDASMVIKLTQGSDNTP-PVLTPRERQILKLITEGSCNRVIAAQLSISQKT 179 Query: 178 IETHRAQLMERLDIRDVPGLVRYAIRTGI 206 +ETHR +M++LD+ V L+ ++ R G+ Sbjct: 180 VETHRLNMMKKLDVHKVAELIHWSYRLGL 208 >VC1277 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Vch Vibrio cholerae Length = 216 Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 125/206 (60%), Gaps = 3/206 (1%) Query: 1 MLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNGLE 60 ++ DDH +V G A L P +EVV AS+G E +E++ +PD+VL+D++M MNG+E Sbjct: 12 VMVDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSMPIMNGIE 71 Query: 61 ALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGRQY 120 A R ++ E P + LML+M+ + EY+MQ + AGA GY+ K+ +A ++ +A+ V G Y Sbjct: 72 ATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEISALKMVQAIKTVHQGATY 131 Query: 121 LDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTIET 180 + + VA P L+ R+ IL+++A+G ++K+IA LN+S +T+ET Sbjct: 132 FCESTTSTLFSQEILPVANKPNP---LSRREEAILRMVAQGCSSKKIATLLNISYRTVET 188 Query: 181 HRAQLMERLDIRDVPGLVRYAIRTGI 206 HR + +LDI L +YA++ G+ Sbjct: 189 HRQNIKHKLDIHSTAELAQYALQHGL 214 >all4635 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Nos Nostoc sp. PCC 7120 Length = 219 Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/198 (39%), Positives = 123/198 (62%), Gaps = 7/198 (3%) Query: 1 MLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNGLE 60 +L DD L+R G++ALL P +E+VGEA +G I++IPQ PD+VL+D+ M M+G+ Sbjct: 5 LLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIMDGVA 64 Query: 61 ALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGRQY 120 A + ++ +P ++ L+L+ + +EYV AL GA GYL KD+ + EL A+ V+ G Sbjct: 65 ATQEIQQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVAIRAVEKGYTQ 124 Query: 121 LDSHISREALDNYMKRVAQNGTP-----VEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 175 L I ++ L + + N TP + LTPR++E+L+LIA G N +EIA QL +S Sbjct: 125 LGPGIVKKLLVQF--QSTPNHTPPAPTHLADLTPREKEVLRLIAAGANNREIAQQLYISE 182 Query: 176 KTIETHRAQLMERLDIRD 193 T++ H ++ RL++RD Sbjct: 183 GTVKNHVTNILNRLNLRD 200 >BS_yvqC [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Bsu Bacillus subtilis Length = 211 Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 123/203 (60%), Gaps = 1/203 (0%) Query: 1 MLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNGLE 60 +L DDH +VR G+ A L A P +EV+GEASDG+E + + +L PD++L+D+ M+GM+G+E Sbjct: 5 LLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIE 64 Query: 61 ALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGRQY 120 A +++ E + ++L+ + ++ V + AGA YL K S A E+ A+ G Sbjct: 65 ATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPK 124 Query: 121 LDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTIET 180 L+S ++ + L + ++ +N P E LT R+ EIL LIAEG KEI +L ++ KT++T Sbjct: 125 LESKVAGKVL-SRLRHSGENALPHESLTKRELEILCLIAEGKTNKEIGEELFITIKTVKT 183 Query: 181 HRAQLMERLDIRDVPGLVRYAIR 203 H ++ +LD+ D YA R Sbjct: 184 HITNILSKLDVSDRTQAAVYAHR 206