BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0241.p (309 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport... 315 1e-85 mlr5222 Non COG 280 3e-75 APE1304 [E] COG4177 ABC-type branched-chain amino acid transport... 172 8e-43 AF0824 [E] COG4177 ABC-type branched-chain amino acid transport ... 124 3e-28 mll3976 Non COG 120 5e-27 >AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 364 Score = 315 bits (806), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 156/262 (59%), Positives = 207/262 (79%) Query: 33 MVFAFVGVPLLGSEYWFSAILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYAAY 92 + A++ VP +G+ Y F AIL+PFL +LA +GLN+LTGYAGQ+SLGSAAFMAVGA+AAY Sbjct: 24 LAIAYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLLTGYAGQVSLGSAAFMAVGAFAAY 83 Query: 93 NFQLRVDGIPIVATLLLSGGCAALVGVLFGLPSLRIKGFYLAVATLAAQFFVVWALTKFP 152 NF LRVDG+P+ +++L+G AA++G++FGLPSLR++GFYLAV+TLAAQFFV WALTKF Sbjct: 84 NFDLRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFS 143 Query: 153 WFSNNSSSGVISTPKIDFFGIAIDTPVRKYLFVLAVVSVLALVAKNLVRSSTGRAWMAVR 212 W SN S+SGVI P + GI+ + PV +YLF L V+ L +A LV S TGR ++AVR Sbjct: 144 WLSNESASGVIDAPALSLAGISFEGPVGRYLFALTTVTALTFLAYRLVSSQTGRNFIAVR 203 Query: 213 DMDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRILFMI 272 D + AA +IG+P++RTKL AFA+SSF GVAG ++AF YL +VEP GF+LD SF+ILF++ Sbjct: 204 DNETAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFNLDRSFQILFIV 263 Query: 273 IIGGVGSILGSFLGSAFILLLP 294 IIGG+ SI G+F G+A I++ P Sbjct: 264 IIGGLASIRGAFFGAALIVVFP 285 >mlr5222 Non COG Length = 346 Score = 280 bits (716), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 162/269 (60%), Positives = 212/269 (78%) Query: 31 LFMVFAFVGVPLLGSEYWFSAILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYA 90 L + FA+ VPL+GS Y F AIL+PFL LA +GLN+LTGYAGQ+SLGSAAFMA GA+A Sbjct: 22 LLLAFAYGIVPLIGSSYLFEAILLPFLALGLAGVGLNILTGYAGQVSLGSAAFMAAGAFA 81 Query: 91 AYNFQLRVDGIPIVATLLLSGGCAALVGVLFGLPSLRIKGFYLAVATLAAQFFVVWALTK 150 AYNF LRV+G+P++ +++L+G AA +G++FGLPSLR+KGFYLAV+TLAAQFFV WALTK Sbjct: 82 AYNFNLRVEGLPLIGSIVLAGIVAAAIGIVFGLPSLRLKGFYLAVSTLAAQFFVQWALTK 141 Query: 151 FPWFSNNSSSGVISTPKIDFFGIAIDTPVRKYLFVLAVVSVLALVAKNLVRSSTGRAWMA 210 F WFSNNS+SGVI P++ G+A+D V +YLF L V++L +A LV S TGR ++A Sbjct: 142 FSWFSNNSASGVIDAPRLSIGGLALDGAVGRYLFALTTVALLTFLAHRLVTSQTGRNFIA 201 Query: 211 VRDMDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRILF 270 +RD + AA +IGIP+++TKL AFA+SSF GVAG ++AF YL +VEP GF LD SF+ILF Sbjct: 202 IRDNETAARIIGIPVLKTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFDLDRSFQILF 261 Query: 271 MIIIGGVGSILGSFLGSAFILLLPIFLDN 299 +IIIGG+ SI G+F G+A I++ P+ L Sbjct: 262 IIIIGGLASIRGAFFGAALIVVFPLGLSR 290 >APE1304 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 349 Score = 172 bits (436), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 123/307 (40%), Positives = 177/307 (57%), Gaps = 13/307 (4%) Query: 3 YREAGQFKTSYIADSQIF--PIRQDRIIFTLFMVFAFVGVPLLGSEYWFSAILVPFLVFA 60 + AG FK SY AD IF PI +I + A P + +Y+ + +LV ++F Sbjct: 4 WMPAGVFKESYEADMAIFRYPIHWAALILAVVAAVA---APFVIGKYYLN-LLVVMMIFW 59 Query: 61 LAALGLNVLTGYAGQLSLGSAAFMAVGAYAAYNFQLRVDGIPIVATLLLSGGCAALVGVL 120 +AA+GLN+ G AGQ+SL AA M +GAY N L + G+ VA L ++G AAL+G++ Sbjct: 60 IAAIGLNITLGLAGQISLAHAALMGIGAYTVANAALHL-GVNSVAILPIAGLAAALLGII 118 Query: 121 FGLPSLRIKGFYLAVATLAAQFFVVWALTKFPWFSNNSSSGVISTPKIDFFGIAIDTPVR 180 LPS R+K +YLA+A+LAAQ + + ++ + + V K GI++ P Sbjct: 119 LSLPSFRLKEYYLAMASLAAQLILEYVYSRI---DPDQYTPVPPETK-TLLGISLTEPTA 174 Query: 181 KYLFVLAVVSVLALVAKNLVRSSTGRAWMAVRDMDVAAEVIGIPLMRTKLTAFAVSSFYC 240 Y F+LA+ V+AL A N+ RSS GRA AVRD DVA+E IGI + K TAFA+ FY Sbjct: 175 LYYFILAITVVMALAAANIGRSSLGRAMKAVRDNDVASEAIGINVQLVKATAFAIGGFYA 234 Query: 241 GVAGALYAFCYLGSVEPDGFSLDLSFRILFMIIIGGVGSIL-GSFLGSAFILLLPIFLDN 299 GVAG LYA Y + +GF+L S +L M++IGG G ++ GS LG + +++ Sbjct: 235 GVAGGLYA-IYSSGIGWEGFTLVNSIELLGMVLIGGPGRVVWGSLLGVLVMRTGWTMMES 293 Query: 300 ALPPLAA 306 + PL A Sbjct: 294 TITPLLA 300 >AF0824 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 323 Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 145/257 (56%), Gaps = 7/257 (2%) Query: 40 VPLLGSEYWFSAILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYAAYNFQLRVD 99 +PL GS Y I F+++ +AA+GLN++ GY GQ SL AF +GAY + L ++ Sbjct: 17 LPLTGSSYALR-ISTLFIIYTIAAMGLNIIIGYTGQASLAQGAFYGLGAYVSA--LLVLN 73 Query: 100 GIPIVATLLLSGGCAALVGVLFGLPSLRIKGFYLAVATLAAQFFVVWALTKFPWFSNNSS 159 G A+++++ A V L GL +LR+KG Y A+ATL + + K+ + Sbjct: 74 GWSFWASVIVAIAFVAFVAFLIGLMTLRLKGAYFAIATLLFNVIIYEVVDKWDEVTRGPR 133 Query: 160 SGV-ISTPKIDFFGIAID--TPVRKYLFVLAVVSVLALVAKNLVRSSTGRAWMAVRDMDV 216 I +P I+ GI+I Y +LAV+ V+ L+ ++RSS G +A+R+ ++ Sbjct: 134 GLFGIPSPSIELSGISISFSGTYNFYYLMLAVLIVMTLLYWLIIRSSFGSIIVAIRENEL 193 Query: 217 AAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRILFMIIIGG 276 AE G+ L + K+ +F +S+ + VAGA Y+ Y+GS+ PD S SF L II GG Sbjct: 194 LAEYAGVNLTKFKVASFVLSAIFAAVAGAFYS-AYIGSIFPDITSFVNSFAFLTAIIFGG 252 Query: 277 VGSILGSFLGSAFILLL 293 G++LG F+G+A + L+ Sbjct: 253 AGTMLGPFIGTAVVTLI 269 >mll3976 Non COG Length = 531 Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/262 (35%), Positives = 132/262 (50%), Gaps = 25/262 (9%) Query: 42 LLGSEYWFSAILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYAAYNFQLRVDGI 101 L GS W + L++ + A GLN++ G AG L LG AF A+GAYA Y G+ Sbjct: 194 LQGSLKWVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVAFYALGAYA-YALLATHYGL 252 Query: 102 PIVATLLLSGGCAALVGVLFGLPSLRIKGFYLAVATLAAQFFVVWALTKFPWFS-NNSSS 160 L +G AAL GVL G P LR++G YLA+ TLA F + L W N S+ Sbjct: 253 SFWILLPAAGCMAALWGVLLGFPVLRLRGDYLAIVTLA--FGEIIRLVLINWREVTNGSA 310 Query: 161 GVISTPKIDFFGI-----------------AIDTPVRK---YLFVLAVVSVLALVAKNLV 200 G+ PK+ FFG+ A + K Y +L + + A V L Sbjct: 311 GISGIPKVSFFGLMTFNVSDPNYIAKVLHLATSSAYYKIFLYYLILGLCLLTAFVTIRLR 370 Query: 201 RSSTGRAWMAVRDMDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDGF 260 R GRAW A+R+ ++A +GI TKLTAFA + + G AG+ +A G V P+ F Sbjct: 371 RLPVGRAWEALREDEIACRSLGINTTTTKLTAFATGAMFGGFAGSFFA-ARQGFVSPESF 429 Query: 261 SLDLSFRILFMIIIGGVGSILG 282 S IL ++++GG+GS++G Sbjct: 430 VFLESAIILAIVVLGGMGSLVG 451