BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0231.p (1036 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 303 2e-81 SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti 254 6e-67 RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum 251 6e-66 CC0896 Non COG 249 3e-65 sll0267_6 [T] COG2200 FOG Syn Synechocystis 246 2e-64 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 186/458 (40%), Positives = 267/458 (58%), Gaps = 18/458 (3%) Query: 563 LTISAVKNKDQQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIA 622 L +SAV+ D + T ++ AE RIR+LA +D LT L NRT ++L +A Sbjct: 306 LKVSAVRANDGSYIGPMLTWALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLA 365 Query: 623 LSLRTKTCAALLFIDLDHFKTLNDTIGHEKGDTLLKQVAQRLLANV-RENDTVARVGGDE 681 + LL+IDLD FK +NDT GH GD LL++VAQRL A R +AR+GGDE Sbjct: 366 AP---EARLGLLYIDLDGFKLVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDE 422 Query: 682 FVVVLEGLNELQQEAATQTRAIGEKILTALGSTYQLD-DVEYRTTASIGATVFLGRAASV 740 F V++ + A + + ++ ALG+ Y L D R ASIG + Sbjct: 423 FAVLVP------HDDADRAATLATALIEALGAPYALGADQNVRIGASIGIALAPAHGRDT 476 Query: 741 DELMKQADLAMYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIDG-NQLLLHYQPQ 799 + L+ +AD+A+Y AK G+ R F M+T + RA LEA LR A++ ++L + YQP Sbjct: 477 ENLLARADIALYAAKAAGKGLARLFCADMETRIQARALLEAQLRAALEHQDRLFVFYQPI 536 Query: 800 V-VEGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACRQLATWAA 858 V V G+VT E LVRW H +RG VPP +F+P+AE++GLI LG +VL ACR+ W Sbjct: 537 VDVATGKVTAREALVRWHHAERGWVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRWED 596 Query: 859 HPQMADLSIAVNVSAPQLREPDFVQTVLDTIERTGANPRRLKLELTESLLVDNVEDIIQK 918 + +AVNVS QL + QTV + +G P RL++E+TE+ L+ N + + Sbjct: 597 GAR-----VAVNVSPMQLGKATLAQTVHAALIDSGLAPDRLEIEVTETALIQNEAESFED 651 Query: 919 MFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNL 978 + L GV +LDDFGTGYSSL++L+ P +++KID+SFVRD+L P+ A + + I +L Sbjct: 652 LRQLYDMGVRVALDDFGTGYSSLAHLRAFPFDKIKIDRSFVRDLLERPDSAVLVRAIADL 711 Query: 979 AQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYFFCRP 1016 + LG+ +AEGVET A + +AGC QGY++ RP Sbjct: 712 GRQLGVTTVAEGVETQAHVRGIREAGCTEAQGYYYGRP 749 >SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti Length = 257 Score = 254 bits (650), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 130/242 (53%), Positives = 168/242 (69%), Gaps = 2/242 (0%) Query: 783 LRKAIDGNQLLLHYQPQV-VEGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSL 841 LR+A+ + LLH+QPQ+ +E GR+ AE L+RWQHP RG++ P FIPLAEETGLI+ + Sbjct: 9 LREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAFIPLAEETGLIVPI 68 Query: 842 GNWVLETACRQLATWAAHPQMADLSIAVNVSAPQLREPDFVQTVLDTIERTGANPRRLKL 901 G+WVL TACRQL W + L ++VNVSA Q RE ++ V +E T R L+L Sbjct: 69 GDWVLRTACRQLKAWQ-DAGLPPLIVSVNVSARQFRERNWAARVAAVLEETCLEARYLEL 127 Query: 902 ELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRD 961 ELTESL++ +V I M AL+A GV ++DDFGTGYSSLS LKR P+ +LKID+SFV D Sbjct: 128 ELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFPVRRLKIDRSFVTD 187 Query: 962 VLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYFFCRPVTVEA 1021 + D +D +I I++LAQ LGL VIAEGVET+AQ FL +GC QGYFF +P+ E Sbjct: 188 IPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEIQGYFFSQPLPGED 247 Query: 1022 FE 1023 FE Sbjct: 248 FE 249 >RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 282 Score = 251 bits (641), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 131/259 (50%), Positives = 171/259 (66%), Gaps = 2/259 (0%) Query: 764 FFDPAMQTAVLERATLEAGLRKAIDGNQLLLHYQPQV-VEGGRVTGAEVLVRWQHPQRGM 822 FF+ +M T V ++ L LR A++ ++L+LHYQP+ G V G E LVRWQHP+RG+ Sbjct: 3 FFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERGL 62 Query: 823 VPPGDFIPLAEETGLILSLGNWVLETACRQLATWAAHPQMADLSIAVNVSAPQLREPDFV 882 V P FIPLAE+TGLI+ LG WVL+ ACRQ+A W A SIAVN+SA Q V Sbjct: 63 VQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGH-AQWSIAVNLSAVQFAHAALV 121 Query: 883 QTVLDTIERTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLS 942 TV DT+ R P+ L LE+TES + + + + + L A GV S+DDFGTGYSSL Sbjct: 122 DTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLL 181 Query: 943 YLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLAD 1002 YLKRLP ++LKID+ FVRD+ D DA+I +V L Q+L L ++AEGVET+AQ++FL Sbjct: 182 YLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTR 241 Query: 1003 AGCHAYQGYFFCRPVTVEA 1021 GCHA QG RP+T +A Sbjct: 242 LGCHALQGNLLGRPMTAQA 260 >CC0896 Non COG Length = 677 Score = 249 bits (635), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 153/439 (34%), Positives = 240/439 (54%), Gaps = 12/439 (2%) Query: 588 RKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTKTCAALLFIDLDHFKTLNDT 647 R+L++E R LA D+LT LPNR L + + ++ IDLD FK +ND Sbjct: 219 RRLSDENDR-LANLDSLTDLPNRRRYFAELDARVEAARQSGRGFVAGVIDLDDFKPINDA 277 Query: 648 IGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNELQQEAATQTRAIGEKI 707 GH GD LL +V +RL A AR+GGDEF ++++ L+ +A R +G ++ Sbjct: 278 FGHATGDRLLIEVGRRLKAFDGAPILAARLGGDEFGLIIDA--ALEPDA---LRVLGREL 332 Query: 708 LTALGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDP 767 +L +TY L V + ASIG F A + ++L ++AD A+Y AK+ G+ A FD Sbjct: 333 CASLQATYDLRGVRAQVGASIGFCPFPSGADTSEQLFERADYALYHAKQNGKGAAVVFDE 392 Query: 768 AMQTAVLERATLEAGLRKAIDGNQLLLHYQPQV-VEGGRVTGAEVLVRWQHPQRGMVPPG 826 + A+ + A +E LR A ++ +H+QP V + R E L RW P+ G + P Sbjct: 393 RHEAAIRDMAVVEQALRSADLEQEMSVHFQPLVDIVSQRTIALEALARWTSPEIGPIRPD 452 Query: 827 DFIPLAEETGLILSLGNWVLETACRQLATWAAHPQMADLSIAVNVSAPQLREPDFVQTVL 886 FI AE +G I+ + ++ A R++ W D+ +++N+SA + + V+ +L Sbjct: 453 VFIGAAERSGQIVEITRLLVAKALREMRAWPM-----DVRVSINLSARDIASMENVRRLL 507 Query: 887 DTIERTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKR 946 + + P R+ E+TE+ +V + + + A GV +LDDFGTG+SSLS+L+ Sbjct: 508 AIVSESCIAPHRIDFEITETAIVCDFDQARDALAAFHELGVRTALDDFGTGHSSLSHLRL 567 Query: 947 LPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCH 1006 LPL++LKID SFV D+ +P I +T++ L ++L + + EGVET+AQR +A G Sbjct: 568 LPLDKLKIDASFVSDIEHNPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGAT 627 Query: 1007 AYQGYFFCRPVTVEAFEKF 1025 QGY F RP+ EA + Sbjct: 628 VMQGYHFARPMPAEAVPGY 646 >sll0267_6 [T] COG2200 FOG Syn Synechocystis Length = 253 Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 121/250 (48%), Positives = 170/250 (68%), Gaps = 4/250 (1%) Query: 776 RATLEAGLRKAIDGNQLLLHYQPQVVEGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEET 835 R LEA LR A++ Q ++ QPQV G GAE L+RW HP RG +PP FIP+AEE Sbjct: 2 RFALEADLRSALEQKQFQVYLQPQVDSHGVWIGAEALLRWNHPGRGFIPPNIFIPIAEEI 61 Query: 836 GLILSLGNWVLETACRQLATWAAHPQMA-DLSIAVNVSAPQLREPDFVQTVLDTIERTGA 894 GLI +G++VLE C+ LA Q+ L IA+NVS Q R+ +F + + + + TG Sbjct: 62 GLIGGIGDFVLEQVCQYLARLQ---QLGLTLRIAINVSPRQFRQANFAKEIKNLLACTGV 118 Query: 895 NPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKI 954 +P RL LE+TE L+V++ I MF L+ G+ FS+DDFGTGYSSLSYLKRLPLN+LKI Sbjct: 119 DPYRLTLEVTEGLIVEDTHQAIATMFELQTLGIHFSVDDFGTGYSSLSYLKRLPLNELKI 178 Query: 955 DQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYFFC 1014 D++FV+D D N+A++ + I+++A++ L ++AEGVET+ Q FLA GC+ YQGYF+ Sbjct: 179 DRAFVQDAPQDLNNAALVEAIISVARTFNLAIVAEGVETEEQVQFLAQLGCNFYQGYFYG 238 Query: 1015 RPVTVEAFEK 1024 RP+ ++ F + Sbjct: 239 RPMPIDEFHQ 248