BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0228.p (307 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1729 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 361 1e-99 AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 288 2e-77 mlr1992 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 287 2e-77 PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 284 2e-76 STM3607 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 282 7e-76 >RSc1729 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 361 bits (927), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 177/297 (59%), Positives = 227/297 (76%), Gaps = 2/297 (0%) Query: 2 HQLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTAD 61 + L+T++IF RVAELASF+ AA LG+P + S+A+QQLE +LGTRLL RTTR+VQLT D Sbjct: 3 NPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLTQD 62 Query: 62 GEAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPIFLDKHPQL 121 G+AF+ RS++LL + E L+ MF QAL GRLRVDM + +AR+VV+PALP FLD HPQL Sbjct: 63 GQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHPQL 122 Query: 122 EIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQTL 181 EIELS++DRRVDLV EGFDCVLR GTL DSSL+ARP+G L Q+NCASP Y+ RYG P++L Sbjct: 123 EIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLGQLPQMNCASPAYIARYGMPRSL 182 Query: 182 EDLAQHRLVHYRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLGLIQL 241 +DL HRLVHY Q LG ++PGWE+ +T PM G +TV++ E+Y AAC AGLG+IQ Sbjct: 183 DDLDHHRLVHYVQTLGTKAPGWEYRIDGRTAHRPMPGVVTVSTAESYEAACQAGLGIIQA 242 Query: 242 PLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHALIFP 298 P+ + + G +VEVLPQYRPAPMPVSL+Y +RR++P R+ FM W+ + P Sbjct: 243 PVSVLAPQ--VARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQLAP 297 >AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 345 Score = 288 bits (736), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 144/296 (48%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 1 MHQLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTA 60 + ++D RIF RV + ASF+ AA LG+P +SVS A+Q+LE +G RLL RTTR+V T Sbjct: 47 LDRIDLFRIFTRVVDCASFTRAADTLGIPRSSVSAAVQELEGRVGARLLNRTTRKVSPTE 106 Query: 61 DGEAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPIFLDKHPQ 120 DG AFY R + L+ + E +F A SGRLR+D+ + R V+ PALP FLD +PQ Sbjct: 107 DGSAFYERCQRLIADVEDTENLFRQTAAQPSGRLRIDVPGRIGRLVIAPALPQFLDLYPQ 166 Query: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQT 180 ++I L +DR VDLV + DCVLR G L DS L+ARPIG L IN ASP YL +YG P+T Sbjct: 167 IDISLGVTDRAVDLVEDNIDCVLRVGPLSDSGLIARPIGKLRLINVASPAYLAQYGAPKT 226 Query: 181 LEDLAQHRLVHYRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLGLIQ 240 DL++H V+Y GR WEW + S+PM +TVN+ E Y A CLAGLGLIQ Sbjct: 227 PHDLSRHWAVNYASPSSGRVENWEWIENDALHSVPMRSRVTVNNAEAYIACCLAGLGLIQ 286 Query: 241 LPLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHALI 296 +P R L+ G ++EV+P +R PMP++LLY+ R+H+ RL F +WL AL+ Sbjct: 287 IP--AYDVRLHLESGELIEVMPGHRAEPMPMTLLYSHRQHLSRRLQVFAEWLEALL 340 >mlr1992 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 301 Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 145/300 (48%), Positives = 203/300 (67%), Gaps = 4/300 (1%) Query: 1 MHQLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTA 60 M L+ + IF VAE+ SF+ AA LG+ S A+++LE+ +G RLL RTTR VQLT Sbjct: 1 MQNLEPILIFITVAEMGSFTRAADSLGIQKGRASTAVRKLEEDVGVRLLHRTTRSVQLTE 60 Query: 61 DGEAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPIFLDKHPQ 120 DG AF+ R+R+LL + + L MF AL GRLRVD+ + +AR ++PALP F+ HP+ Sbjct: 61 DGRAFHARARDLLADVDDLHSMFASDRVALRGRLRVDLPTEVARTTIVPALPDFMATHPE 120 Query: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQT 180 LE+E+S++DR+VDLV EGFDCVLR G + D +L+ARP+G L +N ASP YL RYG P++ Sbjct: 121 LELEVSSTDRQVDLVQEGFDCVLRLGPIRDETLIARPLGLLRMVNAASPAYLARYGVPRS 180 Query: 181 LEDLA--QHRLVHYRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLGL 238 LEDL +HR +H+ +LG R GWE+ DG +L + G++ VNS +TY AA LAGLGL Sbjct: 181 LEDLKRQEHRTIHFSTILGARPHGWEYPDGDNYATLQLPGALHVNSAQTYEAAALAGLGL 240 Query: 239 IQLPLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHALIFP 298 IQ PL+G Q L+ G +VE++P +R + VSL+ A R ++ R+ FM W+ ++ P Sbjct: 241 IQAPLLGVG--QYLESGALVEIIPDFRRRALAVSLVVAHRSNLSRRVRAFMKWIEDVLTP 298 >PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 297 Score = 284 bits (726), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/296 (50%), Positives = 197/296 (66%), Gaps = 3/296 (1%) Query: 1 MHQLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTA 60 M +LD++R+F RVAE SF+ AA L +P A+VS A+QQLE LG+RLL RTTR+VQLT Sbjct: 1 MDRLDSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTH 60 Query: 61 DGEAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPIFLDKHPQ 120 DG R R LL++ E L +FHDG++A SGRL+VD+ S +AR ++ PALP F +HP Sbjct: 61 DGSVVLERCRHLLEDMEELESLFHDGSRA-SGRLKVDVPSRVARLLIAPALPEFFRQHPD 119 Query: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQT 180 +E+EL +SDR VDLV EG DCVLR G L +SSLVAR +G + INCASP YL +G P+T Sbjct: 120 IELELGSSDRSVDLVQEGVDCVLRVGQLGNSSLVARRLGEMQLINCASPAYLEEHGEPRT 179 Query: 181 LEDLAQHRLVHYRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLGLIQ 240 DL +H V+Y GR WE+ + +T + + +TVN+ E+Y A CL+GLGLIQ Sbjct: 180 PADLDRHWAVNYASPSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQ 239 Query: 241 LPLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHALI 296 +P R+ L G + EVLPQ+R MP LY RRH+ R+ F+DWL L+ Sbjct: 240 IPAYDV--REHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLL 293 >STM3607 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 299 Score = 282 bits (721), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 139/296 (46%), Positives = 196/296 (66%), Gaps = 2/296 (0%) Query: 1 MHQLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTA 60 M ++ +++F RVAE SFS AA +GLP SVS IQ LE LG RLL RTTRRVQLT Sbjct: 1 MDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQ 60 Query: 61 DGEAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPIFLDKHPQ 120 DG +Y R+++LL + L G+F ++SG++RVD+ +A +++P LP FL ++P Sbjct: 61 DGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPG 120 Query: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQT 180 + +EL +SDR+VDL+ E FDCV+RT L ++ RP+G L ++NCASP+YL R+G P+ Sbjct: 121 IALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPEN 180 Query: 181 LEDLAQHRLVHYRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLGLIQ 240 L+DLA H +VHY G SPG+ + + + G +TVNSTET++ ACLAGLG+IQ Sbjct: 181 LDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQ 240 Query: 241 LPLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHALI 296 P + R+ L G ++E+LPQYR AP+PV+L Y RR++ R+ FM WL I Sbjct: 241 TPRIAV--REALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETI 294