BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0216.p (297 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0179 [R] COG0523 Putative GTPases (G3E family) Bme Brucella... 307 2e-83 AGl3257 [R] COG0523 Putative GTPases (G3E family) Atu Agrobacter... 302 6e-82 RSc0045 [R] COG0523 Putative GTPases (G3E family) Rso Ralstonia ... 292 6e-79 BS_yciC [R] COG0523 Putative GTPases (G3E family) Bsu Bacillus s... 287 2e-77 PA5535 [R] COG0523 Putative GTPases (G3E family) Pae Pseudomonas... 285 1e-76 >BMEII0179 [R] COG0523 Putative GTPases (G3E family) Bme Brucella melitensis Length = 400 Score = 307 bits (787), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 152/214 (71%), Positives = 179/214 (83%) Query: 15 RRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTE 74 +RLPVTVLSGFLGAGKTTLLNH+L+NRE RRVAVIVNDMSE+N+DAAL+R+GGADLSRTE Sbjct: 3 KRLPVTVLSGFLGAGKTTLLNHVLNNRENRRVAVIVNDMSEINVDAALIREGGADLSRTE 62 Query: 75 EKLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEDGA 134 E+LVEM+NGCICCTLR+DLL EV +LA + RFD L+IESTGISEPLPVA TF F DE G Sbjct: 63 EQLVEMTNGCICCTLRDDLLKEVSQLAAQGRFDYLLIESTGISEPLPVAATFEFRDERGK 122 Query: 135 SLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVIV 194 SLSD ARLDTMVTVVDA NFLKDY+S D L RG+S+GEED RT+VDLL+EQIEF +V+V Sbjct: 123 SLSDGARLDTMVTVVDAANFLKDYASGDFLRDRGESLGEEDERTLVDLLVEQIEFANVVV 182 Query: 195 LNKLDLVAADDLERLHAILHKLNPRARIVRAGAG 228 LNK+ +V+ ++ ++ LNP ARI G Sbjct: 183 LNKISMVSKEECALARKVIRSLNPDARIEETDFG 216 >AGl3257 [R] COG0523 Putative GTPases (G3E family) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 431 Score = 302 bits (774), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 152/231 (65%), Positives = 184/231 (79%), Gaps = 4/231 (1%) Query: 2 LIAMTSS----QRQAADRRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVN 57 ++ MTS+ Q + ++LPVTVLSGFLGAGKTTLLNHIL NR+G RVA+IVNDMSE+N Sbjct: 16 VVVMTSTRLLPQNEVPMKKLPVTVLSGFLGAGKTTLLNHILANRDGLRVALIVNDMSEIN 75 Query: 58 IDAALVRDGGADLSRTEEKLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGIS 117 IDAALVRDGGA+LSRTEE+LVEM+NGCICCTLR+DLL EVR LA + RFD L+IESTGI+ Sbjct: 76 IDAALVRDGGANLSRTEEQLVEMTNGCICCTLRDDLLTEVRALAEQGRFDYLLIESTGIA 135 Query: 118 EPLPVAETFTFTDEDGASLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNR 177 EPLPVA TF F DE+G SLSDVA+LDTMVTVVDA N L DY S D L RG++ G+ DNR Sbjct: 136 EPLPVAATFDFRDENGRSLSDVAQLDTMVTVVDAANLLNDYGSSDFLADRGETAGDGDNR 195 Query: 178 TVVDLLIEQIEFCDVIVLNKLDLVAADDLERLHAILHKLNPRARIVRAGAG 228 T+VDLL+EQIEF DV+VLNK+ ++ + I+ LNP A+++ A G Sbjct: 196 TIVDLLVEQIEFADVVVLNKIGTATPEERDAARKIIVGLNPDAKLIEADFG 246 >RSc0045 [R] COG0523 Putative GTPases (G3E family) Rso Ralstonia solanacearum Length = 424 Score = 292 bits (748), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 150/211 (71%), Positives = 175/211 (82%), Gaps = 3/211 (1%) Query: 21 VLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDG---GADLSRTEEKL 77 +LSGFLGAGKTTLLNH+L NREG+RVAVIVND+S+VNIDA LV DG A LSRT+E++ Sbjct: 1 MLSGFLGAGKTTLLNHVLANREGKRVAVIVNDLSDVNIDAQLVGDGTATSAQLSRTDERM 60 Query: 78 VEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEDGASLS 137 VE+SNGCICCTLREDLL E+ +LARE RFD L+IESTG++EPLP+AETFTF D +G LS Sbjct: 61 VELSNGCICCTLREDLLDEIARLAREDRFDYLLIESTGVAEPLPIAETFTFEDAEGRLLS 120 Query: 138 DVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVIVLNK 197 D+ARLDTMVTVVDA +FL DY + D L RGQ+ E+D+RTVVDLLIEQ+EFCDVIVLNK Sbjct: 121 DLARLDTMVTVVDAQHFLADYDAADFLADRGQARDEDDDRTVVDLLIEQVEFCDVIVLNK 180 Query: 198 LDLVAADDLERLHAILHKLNPRARIVRAGAG 228 DLV + ERL ILH LNPRARI+ A G Sbjct: 181 TDLVDEAERERLAGILHSLNPRARILPASFG 211 >BS_yciC [R] COG0523 Putative GTPases (G3E family) Bsu Bacillus subtilis Length = 397 Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 141/215 (65%), Positives = 175/215 (81%), Gaps = 2/215 (0%) Query: 15 RRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTE 74 +++PVTVLSG+LGAGKTTLLN IL NREG ++AVIVNDMSEVNIDA LV+ G LSRT+ Sbjct: 2 KKIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVNIDAGLVKQEGG-LSRTD 60 Query: 75 EKLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDED-G 133 EKLVEMSNGCICCTLREDLL+EV KLA++ RFD +VIESTGISEP+PVA+TF++ DE+ G Sbjct: 61 EKLVEMSNGCICCTLREDLLIEVEKLAKDGRFDYIVIESTGISEPIPVAQTFSYIDEEMG 120 Query: 134 ASLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVI 193 L+ +LDTMVTVVDA F DY S +SL R +++GE+D R + DLLI+QIEFCDV+ Sbjct: 121 IDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGEKDEREIADLLIDQIEFCDVL 180 Query: 194 VLNKLDLVAADDLERLHAILHKLNPRARIVRAGAG 228 +LNK DLV+ +LE+L +L KL PRAR +R+ G Sbjct: 181 ILNKCDLVSEQELEQLENVLRKLQPRARFIRSVKG 215 >PA5535 [R] COG0523 Putative GTPases (G3E family) Pae Pseudomonas aeruginosa Length = 400 Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 145/211 (68%), Positives = 174/211 (82%), Gaps = 3/211 (1%) Query: 14 DRRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALV-RDGGADLSR 72 ++RLPVTVLSGFLGAGK+TLLNH+L NRE RRVAVIVNDMSE+NID + V RD L+R Sbjct: 2 NQRLPVTVLSGFLGAGKSTLLNHVLKNRENRRVAVIVNDMSEINIDGSEVQRD--VSLNR 59 Query: 73 TEEKLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDED 132 EE+LVEMSNGCICCTLREDLL EV +LARE RFD L+IESTGISEP+PVAETFTF DE Sbjct: 60 AEERLVEMSNGCICCTLREDLLEEVGRLAREGRFDYLLIESTGISEPMPVAETFTFRDEL 119 Query: 133 GASLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDV 192 SLSDVARLDTMVTVVD NFL+DY SL RG+++GEED R++ DLLI+Q+EF DV Sbjct: 120 DRSLSDVARLDTMVTVVDGMNFLRDYQEAASLASRGETLGEEDQRSITDLLIDQVEFADV 179 Query: 193 IVLNKLDLVAADDLERLHAILHKLNPRARIV 223 I+++K+DL++++ E L AIL +LN A I+ Sbjct: 180 ILVSKIDLISSEQREELLAILRQLNAEAEIL 210