BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0180.p         (133 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF2491 [K] COG1396 Predicted transcriptional regulators Xfa Xyle...   234   3e-62
YPO0881 [K] COG1396 Predicted transcriptional regulators Ype Yer...   157   6e-39
ygiT [K] COG1396 Predicted transcriptional regulators Eco Escher...   144   5e-35

>XF2491 [K] COG1396 Predicted transcriptional regulators Xfa Xylella
           fastidiosa 9a5c
          Length = 133

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 105/132 (79%), Positives = 122/132 (92%)

Query: 1   MKCPCCGAAELVHETRDLPYTYKGESTLIAQVKGDFCPACGEVLLDREHGDRYSELIGQF 60
           M+CPCCGAAEL+H+TRD+ YTYK E+T I  V GDFCPACGEV+LDREHGDRYSEL+G F
Sbjct: 1   MRCPCCGAAELIHDTRDMLYTYKSETTSIPTVTGDFCPACGEVVLDREHGDRYSELVGLF 60

Query: 61  QRKVNAAYVDPAYIARVRRKLDLDQREAGELFGGGVNAFSRYENGKTKPPLSLVKLFRLL 120
           QR+VN+AYVDP YI ++RRKLDLDQR+A ELFGGGVNAFSRYENGKTKPPLSLVKLF+LL
Sbjct: 61  QRQVNSAYVDPGYITKIRRKLDLDQRQAAELFGGGVNAFSRYENGKTKPPLSLVKLFKLL 120

Query: 121 DRHPDLLDEIRA 132
           DRHPDLL+E+++
Sbjct: 121 DRHPDLLNEVKS 132


>YPO0881 [K] COG1396 Predicted transcriptional regulators Ype Yersinia
           pestis
          Length = 132

 Score =  157 bits (397), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 91/131 (69%)

Query: 1   MKCPCCGAAELVHETRDLPYTYKGESTLIAQVKGDFCPACGEVLLDREHGDRYSELIGQF 60
           MKCP CG  EL+HE RD+P+TYKG   ++  V G  CPACGE ++     D Y+      
Sbjct: 2   MKCPVCGGVELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETVMTEAESDVYAAKTMLL 61

Query: 61  QRKVNAAYVDPAYIARVRRKLDLDQREAGELFGGGVNAFSRYENGKTKPPLSLVKLFRLL 120
           ++ VN   + PAYI ++R+KL L+QREA E+FGGGVNAFSRYE GK  P  S +KL ++L
Sbjct: 62  RKMVNTESIAPAYIVQIRKKLGLNQREASEIFGGGVNAFSRYEKGKALPHPSTIKLLQVL 121

Query: 121 DRHPDLLDEIR 131
           D+HP+LL+EIR
Sbjct: 122 DKHPELLNEIR 132


>ygiT [K] COG1396 Predicted transcriptional regulators Eco Escherichia
           coli K12
          Length = 131

 Score =  144 bits (363), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 89/131 (67%)

Query: 1   MKCPCCGAAELVHETRDLPYTYKGESTLIAQVKGDFCPACGEVLLDREHGDRYSELIGQF 60
           MKCP C   E+V   +D+PYT++G  T++  + G +C  C E ++++E  D +   +  F
Sbjct: 1   MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAF 60

Query: 61  QRKVNAAYVDPAYIARVRRKLDLDQREAGELFGGGVNAFSRYENGKTKPPLSLVKLFRLL 120
           +  VNA  V P +I +VR+KL L Q+EA E+FGGGVNAFSRYE G  +P  S +KL R+L
Sbjct: 61  RASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVL 120

Query: 121 DRHPDLLDEIR 131
           D+HP+LL+EIR
Sbjct: 121 DKHPELLNEIR 131