BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0134.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ydeS [K] COG1309 Transcriptional regulator Bsu Bacillus subtilis   107   1e-23
CAC3481 [K] COG1309 Transcriptional regulator Cac Clostridium ac...   105   3e-23
SMa2008 [K] COG1309 Transcriptional regulator Sme Sinorhizobium ...    69   4e-12
mlr3465 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...    60   2e-09

>BS_ydeS [K] COG1309 Transcriptional regulator Bsu Bacillus subtilis
          Length = 198

 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%)

Query: 3   VGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTDIELHMLQLSQLLRGKSGRVV 62
           V KATIY+WW NK+A+ M++ L       P+ D+GSS  DI  H   L++ L  + G V+
Sbjct: 44  VSKATIYKWWSNKAAVIMDSFLSTATDRLPVPDTGSSVQDIVTHATNLARFLTSREGTVI 103

Query: 63  REMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRGEFREDADLSLVFDLLYAPLL 122
           +E+I   Q + +    +   + +PRRL    +L +G Q+GE RE+ D+ +  DL+Y P+ 
Sbjct: 104 KELIGAGQLDEKLAEEYRTRFFQPRRLQAKGLLEKGIQKGELRENLDIEVSIDLIYGPIF 163

Query: 123 QRLLTGQGDIDERQVQ 138
            RLL    ++++  V+
Sbjct: 164 YRLLITGDEVNDSYVR 179


>CAC3481 [K] COG1309 Transcriptional regulator Cac Clostridium
           acetobutylicum
          Length = 192

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 76/132 (57%)

Query: 2   GVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTDIELHMLQLSQLLRGKSGRV 61
            V KATIY+WWPNK+A+ ++  L       PI D+GS+  D+ + +   ++ L  + G V
Sbjct: 43  NVSKATIYKWWPNKAAVIIDGFLNTTNVELPIPDTGSTIQDMFIQVDNFTKFLTSRKGSV 102

Query: 62  VREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRGEFREDADLSLVFDLLYAPL 121
           + E+IA  Q++P+   I+   Y  PRR     +L RG  RGE ++D ++ ++ DL++ P+
Sbjct: 103 ITEIIAEGQYDPKLADIYRKAYFTPRRSISKKILERGILRGELKKDLNIEVIIDLIWGPI 162

Query: 122 LQRLLTGQGDID 133
             RLL     ID
Sbjct: 163 FYRLLITGEKID 174


>SMa2008 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 201

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 2   GVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSS-RTDIELHMLQLSQLLRGKSGR 60
           GVGK TIYR W N S LAM AL+     +    + G+S R+ +   M  L Q      GR
Sbjct: 50  GVGKPTIYRHWANASELAMAALMSGDPGI--FAEGGTSLRSALAGQMRSLIQAFATTRGR 107

Query: 61  VVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRGEFREDADLSLVFDLLYAP 120
            +   +A A  E E  + F +  +   R A  ++L   A RGE     DL ++ D++Y P
Sbjct: 108 QIAMTLAAADPESEFTKAFRNQVILSSREAGRAMLLEAAARGEITLQQDLEVLLDMIYGP 167

Query: 121 LLQRLLTGQGDID 133
           +  RLL G   +D
Sbjct: 168 VFYRLLVGHRPLD 180


>mlr3465 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 198

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 3   VGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTDIELHMLQLSQLLR-GKSGRV 61
            GK TIYRWWP+K+AL +E   R  +    I D+GS   D+   ++ L    R   SG V
Sbjct: 51  AGKPTIYRWWPSKAALLLEVYQR--QKRVDIPDTGSLEEDLVGFLVNLFAHWRETSSGSV 108

Query: 62  VREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRGEFREDADLSLVFDLLYAPL 121
            R +IA AQ + E+       Y   RR     ++ R   RGE   D D  +V D++ +  
Sbjct: 109 FRSLIAEAQSD-ETAAAALAGYAGARRTHTGQIIERAKARGEIAGDIDPGVVADIIASYA 167

Query: 122 LQRLLTGQGDIDERQVQAQLKLVLGSIT 149
            + LLT + D  +  ++  ++ +L  I 
Sbjct: 168 WRHLLTNRLDEPKATIRKMVRYLLQGIA 195